Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3313 ATGGCGTATAGGGTCAAAGGAGAATCATTTCCATGCTCTTCGAATTCAGCTCCAAAATGGAAACATGATGTTTTTTTGAGTTTTGCAGGAAAAGATACTCGCTTGAATTTTACAGATCACTTGTATTCAGCTTTTAGTCAAAGTGGCATACGAGCTTTTAAGGATGATAAAGGAATAGAGAGAGGAGAAGTCATATCGCAACAATTATTTCAAGCAATTGAAGACTCTCTCATTGCTGTTGTTGTTCTCTCTCAAAATTATGCAAATTCTGCATGGTGTTTGGATGAACTTCAAAAGATCATTGACTGTAGAAATAAATTGGGTCAACAAGTTTTCCCTATTTTTTATGGTGTAGATCCGTCCGATGTAAGGCATTTAAGGAAAAGTTTTGCGTTAGCTTTAGCTAAACATGAAGAGAGATTTAAAGGAAGCAACGACAAACTGCAGAAATGGAAAAATGCTTTGTTGGAAATTAGCAATTTGCCAGGTTGGGACACGAGGGGTCGGCCTGAAACACAAGTTATCCAAGACGCTGTCGAAGCAATATGGAACAAACTGTGTTCCAAATTGCCATCTTATGATGATTATAATTTAGTTGGAATAGTCTCAAGGATAGTTGAAATAAATTCACTCTTGAAGATAGGGTTGGGCGATGTTCGTTTTGTAGGCATATGGGGGATGGGCGGTATTGGTAAAACTACTCTTGCTAGAGTTGTTTATGAAAGCATCTCTCACCAATTTGAAATATGTTGCTTTCTTGCTGATGTTAGAGAAACTTCTGAAAGAAAAGGCAAGGTTTATTTACAAAGAGAGCTTCTTTCACATTCAATTGGAGAATTGGCCGTTCTTCCAGAGTGGTTTGGTGAGGGTAGTAGAGTAATTATAACAACTAGGGATAAGCATTTGTTGACTTCACATGGAGTTCATGGAATATATGAGATGGAACCCATGAAAGAAGATGAATCTCTCAAGATCTTTTCAAAGAAAGCATTCAAAAAAGATCATCCTAAGGAGGGCTATGTGGAGTTGTCTAAATCTGTGGTTGAATATGCTGGTGGTCTTCCTTTGGCGCTGCAGGTTTTAGGTTCTTTTCTTCATGGAAGAAGTGTACTTGAGTGGGAAGATGCTTTAGACAGATTAAAACAAATTTCATATAAGGATGTTTTTGAGATTCTTAAAATAAGCTATGATGGATTAAATGACGAAGAGAAGGCAATATTCTTGGATATTGCATGCTTTTTCAAGGGATGGGAAAAAGATGAAGTAATCCAAATTTTGAAAAATATTGGTCTTCATTCGTCAATTGGAATAAATATCCTCATTGAAAAAACTTTGCTAGTTGAACACCATACTGACTTTGGAAGATGCCGTTTAGAGATGCATGATTTATTTCAAGAAATGGGCAGGAATATAATTTATCAAGAATCTCCTAGCATTGCTTGCAGACGCAGTAGACTGTGGAAGGTCGAGGACATCGATGAAGTATTGGAAAATACTATTGGAACTGAAGCAATACAAAGCATTGTGCTATATTCCTCACGACGGGATGATCCTGAAGTATATTGGGAACCCCACGCTTTTTCCAAGATGTTTAATCTCAGATTACTCATCATTCAAAGAAGATCGGAACTTCCCAATGGTCTCAAATGCCTCTCTAGTGCATTAAGAGTTGTTCAATGGCCATTTTGCCCTCTAGAAGCTCTTCCGCTCGGAACACCATTGAATAAACTTGTTGATATTCAAATGAAACATAGCAGTATAAAGATACTTTGGAATGGCGTACAGATTATGAAAAACTTCAAGTTCATTGATATGAGCTTTTCTAAAATACTGACTAAAACTCCAGATTTCTCGGGAGTTCCAAATTTAGAAAATTTAATTCTTGAAGGTTGTTCATCCCTTCTTGTTGTTCATCATTCCCTTGGAGGGTTAAAAAGCTTGTCAGCGTGA 1950 0.3708 MAYRVKGESFPCSSNSAPKWKHDVFLSFAGKDTRLNFTDHLYSAFSQSGIRAFKDDKGIERGEVISQQLFQAIEDSLIAVVVLSQNYANSAWCLDELQKIIDCRNKLGQQVFPIFYGVDPSDVRHLRKSFALALAKHEERFKGSNDKLQKWKNALLEISNLPGWDTRGRPETQVIQDAVEAIWNKLCSKLPSYDDYNLVGIVSRIVEINSLLKIGLGDVRFVGIWGMGGIGKTTLARVVYESISHQFEICCFLADVRETSERKGKVYLQRELLSHSIGELAVLPEWFGEGSRVIITTRDKHLLTSHGVHGIYEMEPMKEDESLKIFSKKAFKKDHPKEGYVELSKSVVEYAGGLPLALQVLGSFLHGRSVLEWEDALDRLKQISYKDVFEILKISYDGLNDEEKAIFLDIACFFKGWEKDEVIQILKNIGLHSSIGINILIEKTLLVEHHTDFGRCRLEMHDLFQEMGRNIIYQESPSIACRRSRLWKVEDIDEVLENTIGTEAIQSIVLYSSRRDDPEVYWEPHAFSKMFNLRLLIIQRRSELPNGLKCLSSALRVVQWPFCPLEALPLGTPLNKLVDIQMKHSSIKILWNGVQIMKNFKFIDMSFSKILTKTPDFSGVPNLENLILEGCSSLLVVHHSLGGLKSLSA 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3313 649 Gene3D - 317 400 IPR042197 -
Prci2g3313 649 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Prci2g3313 649 FunFam Disease resistance protein (TIR-NBS-LRR class) 318 400 - -
Prci2g3313 649 Gene3D - 189 283 IPR027417 -
Prci2g3313 649 PRINTS Disease resistance protein signature 618 634 - -
Prci2g3313 649 PRINTS Disease resistance protein signature 221 236 - -
Prci2g3313 649 PRINTS Disease resistance protein signature 351 365 - -
Prci2g3313 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 410 IPR027417 -
Prci2g3313 649 SUPERFAMILY L domain-like 460 647 - -
Prci2g3313 649 Gene3D Ribonuclease Inhibitor 473 649 IPR032675 -
Prci2g3313 649 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 285 648 IPR044974 GO:0006952
Prci2g3313 649 ProSiteProfiles TIR domain profile. 20 190 IPR000157 GO:0007165
Prci2g3313 649 Coils Coil 134 154 - -
Prci2g3313 649 Gene3D - 16 188 IPR035897 -
Prci2g3313 649 Pfam TIR domain 21 200 IPR000157 GO:0007165
Prci2g3313 649 SMART till_3 21 161 IPR000157 GO:0007165
Prci2g3313 649 Pfam NB-ARC domain 218 253 IPR002182 GO:0043531
Prci2g3313 649 Pfam NB-ARC domain 288 397 IPR002182 GO:0043531
Prci2g3313 649 SUPERFAMILY "Winged helix" DNA-binding domain 387 497 IPR036390 -
Prci2g3313 649 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 164 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3313 Prci-Chr2 42105240 42109005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3313 5 632 WRKY Transcription Factor Family AT4G12020 29.635 1.80e-75 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3313 - - pcin:129302768 1305.81