LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g3308	ATGGGAGGCAAATGGAGCAATGATGAGGACGTACCTCAAGGAGAATCAGACCAAGAACTTGAGCAGTTGCAAGAGGAGAAGCTGATTATTGAGAGAGGATATTGGAAGGGAGGCTTAGGATTTTTCCACCTAATTACACCGCCTGCTCCTCTCAATGATGACGATGACCTTGATCTCTTTGGTGATGAGAGAGAGGAGGAAAAGGCAGCAGCAAAGGCAAGAGAGGCTACTAAAAAGGAATCCTCTAAGAAGAAAGAGAGTGGGAAGTCCTCTATTTTGCTTGATGTGAAGCCTTGGGACGACGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGTTCCATTGAGATGCCTGAGCTTCTGTGGGGAGCATCCAAACTGGTTCCGGTTGGTTACGGTATTAAGAATGACGACCTTGTCTCTGTGGATTCCCTTATTAAGGAACATCTCACAGTTGAGCCATGCAGTGAGTATGTTCAAAGTTGTGACATTGTTGCATTCAACAAAATCTAA	513	0.4542	MGGKWSNDEDVPQGESDQELEQLQEEKLIIERGYWKGGLGFFHLITPPAPLNDDDDLDLFGDEREEEKAAAKAREATKKESSKKKESGKSSILLDVKPWDDETDMKKLEEAVRSIEMPELLWGASKLVPVGYGIKKXDDLVSVDSLIKEHLTVEPCSEYVQSCDIVAFNKI	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g3308	171	MobiDBLite	consensus disorder prediction	63	89	-	-
	Prci2g3308	171	MobiDBLite	consensus disorder prediction	40	89	-	-
	Prci2g3308	171	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	52	171	-	-
	Prci2g3308	171	SMART	EF1_GNE_2	89	171	IPR014038	GO:0003746\|GO:0006414
	Prci2g3308	171	FunFam	Elongation factor 1-beta 1 like	83	171	-	-
	Prci2g3308	171	Pfam	EF-1 guanine nucleotide exchange domain	91	171	IPR014038	GO:0003746\|GO:0006414
	Prci2g3308	171	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	160	171	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Prci2g3308	171	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	53	61	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Prci2g3308	171	SUPERFAMILY	eEF-1beta-like	86	171	IPR036219	-
	Prci2g3308	171	CDD	EF1B	92	171	IPR014038	GO:0003746\|GO:0006414
	Prci2g3308	171	Gene3D	-	82	171	IPR014717	-
	Prci2g3308	171	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g3308	Prci-Chr2	41964134	41971500	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g3308	59	171	Eukaryotic Initiation Factors Gene Family	AT5G12110	72.500	4.66e-50	159

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g3308	K03232		-	pda:103711704	169.474