Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3305 ATGTTATTGCAGATTCCGATTCAGACACAACCAAGAAATCAAAACACTGCAATGGCGTATAGGGTCAAAGGAGAATCATTTTCAACCTCTTCTAATTCAACTCCAAAATGGAAACATGATGTTTTTTTGAGTTTTGCAGGAAAAGATACTCGCTTGAATTTTACAGATCACTTGTATTCTGCTTTTAGTCAACGTGGCATACGAGCTTTTAAGGATGATAAAGGAATAGAGAGAGGAGAAGTCATATCACAACAATTATTTCAAGCAATTGAAGACTCTCTCGTTGCTGTTGTTGTTTTCTCTCAAAATTATGCAAATGCTGCATGGTGTTTGGATGAACTTCAAAAGATCATTGACTGCAGAAATAAATTGGGTCAACAAGTTTTCCCTATTTTTTATGGTGTAGATCCGTCCGATGTACGGCATTTAAGAAAAAGTTTTGCATTAGCTTTAGCTAAACATGAAGAGAGATTTAAAGGAAGCAAAGACAAACTGCAGAAATGGAAAAATGCTTTGTTGGAGATTAGCAATTTGTCAGGTTGGGACACGAGTGGTCGGCCTGAAACACAAGTTATCCAAGACGTTGTTGAAGCAATATGGAACAAACTATGTTCTAAATTGCCATCTTATGATGATTATAATTTAGTTGGAATGGTCTCAAGGATAGTTGAAATAAATTCACTTTTGAAGATAGGGTTGGGCGAGGTTCTTTTTGTAGGCATATGGGGCATGGGCGGTATAGGTAAAACAACTCTTGCTAGAGTTGTTTATGAAAACATCTCTGACCAATTTGAAATATGTTGCTTTCTTGCTGATATTAGGGAAACTTCTGAAAGAAAAGGCAAAGTTTATTTACAAAGAGAGCTTCTTTCACATGTAAGTAATATTAAAATTAAGAATGAGTTCGAAGGAAAGAAGGAAATAAGAAAATACTTTTGGAATAAAATGGTTCTCCTTGTTCTTGATGATATAAATCATGTGAGTCAATTGGGTAATTTGGCTGCTATTCCAGAGTGGTTTGGTGAGGGTAGTAGAGTAATTATAACAACAAGAGATAAGCATTTGTTGACTTCACATGGAGTTCATGGAATATATGAGATTGAACCCATGAAAGAAGATGAATCTCTCAAGATCTTTTCAAAGGAAGCATTCAAAAAAGATCATCCTGAAGAGGGCTATGTGGAATTGTCTAAATCTGTGGTTGAATATGCTGGTGGTCTTCCTTTGGCGCTACAGGTTTTAGGTTCTTTTCTTCACGGAAGAAGTGTACTTGAGTGGGAAGATGCTTTAGACAGATTGAAACAAATTTCAGATAAGGATGTTTTTCAGATTCTTAAAATTAGCTATGATGGATTAAATGATGAAGAGAAGGCATTATTCTTGGATATTGCATGCTTTTTCAAGGGATGGGAGAAAGATGAAGTAATCCAAATTTTGAAAAATACTGGTCTTCATTCGTCAATTGGAATAAGTATCCTCATTGAAAAAGCTTTGCTAGTTGAACACCATACTGATTTTGGAACATGCCGTTTAGAGATGCATGATTTATTTCAAGAAATGGGCAGGAATATAGTTTATCAAGAATCTCCTAGCATTGCTTGCAGACGCAGTAGACTGTGGAAGATCGAGGACATTGATGAAGTATTGGAAAACACTATTGGAACTGAAGCAATACAAAGCATTGTGTTAGATTCCTCACAACGGGATGATCCTGAAGTCTATTGGGAACCTCATGCTTTTTCGAAGTTGTTTAATCTCAGATTACTCGTCATTCGAAGAAGATTGGAACTTCCCAATGGTCTCAAATGCCTCTCTAGTGCATTAAGAGTTATTCAATGGCAATTTTGCCCTCTAGAAGCTCTTCCGCTCGGGACACCATTGAATAAACTAGTTGATATTGAAATGCAACAAAGTAATATAAAGCAACTTTGGTACGGCGTACAGCTTGTCAGCGTGAATTTGTGTGGATGCACAAGTCTTAAAGTCATTCCAAGAAAATTGGAAACGAATTCATTGGAGAAGTTACTCCTTAGGCGTTGTTCTGAAGTTTCAATGCTCCCAGAGTTTGGGGAAGGCATGAAAACATTATCATTGCTTGACGTGAGTTATACTGCTGTAAGGGGACTTCCTCAGTCATTTGGATTTTTGACCGGTCTTAGAGATTTGAAAATGAGAAATTGTGAACATCTTGTTTTGCGCTTGTCTGTCTTCCACCATTTGAAGAATCTAAAAACGGTTGACATGTGTGGTTGCTTAAAACTTTCCAAGGGGCCAAAAAGACTGAATGAAATCGTAGCCTCGGAAAAACACGACATGAGTGAAAATTTCAGAACAGACATGACTCTGTTCAGTGCTATAGTAAGCAATCAAGTCTTCAGCTTTAATCCATCGGCAATAACAGAGTTAGACTTAAGCGCTTGTGGCCTCAGTGATGGATCAATTGTTGAACATTTCAGTGGTCTCTCGTCATTACTTGTGTTAAATCTTGGAGGGAATGATTTTGTTATTCTACCTGATGGTTGGATCTGTAGTTCTATTCGACTACGCTTTCTTTTTCTGAGTGCCTGCAGGAGGCTTAAGTCACTGCCCAAGCTTCCACCACAGTTAATTCGATTAGACGCAGTGGGCTGTAATTCAATGGAACCTTTATCAGAAAGACAATTATGGAATATGGTTTCATCGCTTCACCATGAGTATCGCCATCAAGTTAAATATGAGAACACACTGCTCAAGCACATTGAGGTTAATGTTGCTGCAGGTAGCAGAATATTTTCCCCAGAGAGATTTTTTCGCAATTATTCGGGGATCTGA 2811 0.3757 MLLQIPIQTQPRNQNTAMAYRVKGESFSTSSNSTPKWKHDVFLSFAGKDTRLNFTDHLYSAFSQRGIRAFKDDKGIERGEVISQQLFQAIEDSLVAVVVFSQNYANAAWCLDELQKIIDCRNKLGQQVFPIFYGVDPSDVRHLRKSFALALAKHEERFKGSKDKLQKWKNALLEISNLSGWDTSGRPETQVIQDVVEAIWNKLCSKLPSYDDYNLVGMVSRIVEINSLLKIGLGEVLFVGIWGMGGIGKTTLARVVYENISDQFEICCFLADIRETSERKGKVYLQRELLSHVSNIKIKNEFEGKKEIRKYFWNKMVLLVLDDINHVSQLGNLAAIPEWFGEGSRVIITTRDKHLLTSHGVHGIYEIEPMKEDESLKIFSKEAFKKDHPEEGYVELSKSVVEYAGGLPLALQVLGSFLHGRSVLEWEDALDRLKQISDKDVFQILKISYDGLNDEEKALFLDIACFFKGWEKDEVIQILKNTGLHSSIGISILIEKALLVEHHTDFGTCRLEMHDLFQEMGRNIVYQESPSIACRRSRLWKIEDIDEVLENTIGTEAIQSIVLDSSQRDDPEVYWEPHAFSKLFNLRLLVIRRRLELPNGLKCLSSALRVIQWQFCPLEALPLGTPLNKLVDIEMQQSNIKQLWYGVQLVSVNLCGCTSLKVIPRKLETNSLEKLLLRRCSEVSMLPEFGEGMKTLSLLDVSYTAVRGLPQSFGFLTGLRDLKMRNCEHLVLRLSVFHHLKNLKTVDMCGCLKLSKGPKRLNEIVASEKHDMSENFRTDMTLFSAIVSNQVFSFNPSAITELDLSACGLSDGSIVEHFSGLSSLLVLNLGGNDFVILPDGWICSSIRLRFLFLSACRRLKSLPKLPPQLIRLDAVGCNSMEPLSERQLWNMVSSLHHEYRHQVKYENTLLKHIEVNVAAGSRIFSPERFFRNYSGI 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3305 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 463 IPR027417 -
Prci2g3305 936 Pfam TIR domain 38 217 IPR000157 GO:0007165
Prci2g3305 936 Gene3D Ribonuclease Inhibitor 789 916 IPR032675 -
Prci2g3305 936 Pfam NB-ARC domain 226 450 IPR002182 GO:0043531
Prci2g3305 936 SUPERFAMILY Toll/Interleukin receptor TIR domain 28 181 IPR035897 -
Prci2g3305 936 Gene3D Ribonuclease Inhibitor 563 788 IPR032675 -
Prci2g3305 936 Gene3D - 205 362 IPR027417 -
Prci2g3305 936 FunFam Disease resistance protein (TIR-NBS-LRR class) 35 205 - -
Prci2g3305 936 Gene3D - 33 204 IPR035897 -
Prci2g3305 936 SUPERFAMILY L domain-like 570 890 - -
Prci2g3305 936 Coils Coil 151 171 - -
Prci2g3305 936 Gene3D - 370 453 IPR042197 -
Prci2g3305 936 PRINTS Disease resistance protein signature 404 418 - -
Prci2g3305 936 PRINTS Disease resistance protein signature 738 754 - -
Prci2g3305 936 PRINTS Disease resistance protein signature 311 325 - -
Prci2g3305 936 PRINTS Disease resistance protein signature 238 253 - -
Prci2g3305 936 ProSiteProfiles TIR domain profile. 37 207 IPR000157 GO:0007165
Prci2g3305 936 SMART till_3 38 178 IPR000157 GO:0007165
Prci2g3305 936 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 39 877 IPR044974 GO:0006952
Prci2g3305 936 SUPERFAMILY "Winged helix" DNA-binding domain 440 550 IPR036390 -
Prci2g3305 936 FunFam Disease resistance protein (TIR-NBS-LRR class) 371 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3305 Prci-Chr2 41831321 41837360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3305 22 788 WRKY Transcription Factor Family AT4G12020 27.791 4.45e-83 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3305 - - pcin:129301954 1807.73