Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3303 ATGGCGTATAGGGTCAAAGGAGAATCATTTTCAACCTCTTCTAATTCAACTCCAAAATGGAAACATGATGTTTTTTTGAGTTTTGCAGGAAAAGATACTCGCTTGAATTTTACAGATCACTTGTATTCTGCTTTTAGTCAACGTGGCATACGAGCTTTTAAGGATGATAAAGGAATAGAGAGAGGAGAAGTCATATCACAACAATTATTTCAAGCAATTGAAGACTCTCTCGTTGCTGTTGTTGTTTTCTCTCAAAATTATGCAAATGCTGCATGGTGTTTGGATGAACTTCAAAAGATCATTGACTGCAGAAATAAATTGGGTCAACAAGTTTTCCCTATTTTTTATGGTGTAGATCCGTCCGATGTACGGCATTTAAGAAAAAGTTTTGCATTAGCTTTAGCTAAACATGAAGAGAGATTTAAAGGAAGCAAAGACAAACTGCAGAAATGGAAAAATGCTTTGTTGGAGATTAGCAATTTGTCAGGTTGGGACACGAGTGGTCGGCCTGAAACACAAGTTATCCAAGACGTTGTTGAAGCAATATGGAACAAACTATGTTCTAAATTGCCATCTTATGATGATTATAATTTAGTTGGAATGGTCTCAAGGATAGTTGAAATAAATTCACTTTTGAAGATAGGGTTGGGCGAGGTTCTTTTTGTAGGCATATGGGGCATGGGCGGTATAGGTAAAACAACTCTTGCTAGAGTTGTTTATGAAAACATCTCTGACCAATTTGAAATATGTTGCTTTCTTGCTGATATTAGGGAAACTTCTGAAAGAAAAGGCAAAGTTTATTTACAAAGAGAGCTTCTTTCACATGTAAGTAATATTAAAATTAAGAATGAGTTCGAAGGAAAGAAGGAAATAAGAAAATACTTTTGGAATAAAATGGTTCTCCTTGTTCTTGATGATATAAATCATGTGAGTCAATTGGGTAATTTGGCTGCTATTCCAGAGTGGTTTGGTGAGGGTAGTAGAGTAATTATAACAACAAGAGATAAGCATTTGTTGACTTCACATGGAGTTCATGGAATATATGAGATTGAACCCATGAAAGAAGATGAATCTCTCAAGATCTTTTCAAAGGAAGCATTCAAAAAAGATCATCCTGAAGAGGGCTATGTGGAATTGTCTAAATCTGTGGTTGAATATGCTGGTGGTCTTCCTTTGGCGCTACAGGTTTTAGGTTCTTTTCTTCACGGAAGAAGTGTACTTGAGTGGGAAGATGCTTTAGACAGATTGAAACAAATTTCAGATAAGGATGTTTTTCAGATTCTTAAAATTAGCTATGATGGATTAAATGATGAAGAGAAGGCATTATTCTTGGATATTGCATGCTTTTTCAAGGGATGGGAGAAAGATGAAGTAATCCAAATTTTGAAAAATACTGGTCTTCATTCGTCAATTGGAATAAGTATCCTCATTGAAAAAGCTTTGCTAGTTGAACACCATACTGATTTTGGAACATGCCGTTTAGAGATGCATGATTTATTTCAAGAAATGGGCAGGAATATAGTTTATCAAGAATCTCCTAGCATTGCTTGCAGACGCAGTAGACTGTGGAAGATCGAGGACATTGATGAAGTATTGGAAAACACTATTGGAACTGAAGCAATACAAAGCATTGTGTTAGATTCCTCACAACGGGATGATCCTGAAGTCTATTGGGAACCTCATGCTTTTTCGAAGTTGTTTAATCTCAGATTACTCGTCATTCGAAGAAGATTGGAACTTCCCAATGGTCTCAAATGCCTCTCTAGTGCATTAAGAGTTATTCAATGGCAATTTTGCCCTCTAGAAGCTCTTCCGCTCGGGACACCATTGAATAAACTAGTTGATATTGAAATGCAACAAAGTAATATAAAGCAACTTTGGTACGGCGTACAGCTTGTCAGCGTGAATTTGTGTGGATGCACAAGTCTTAAAGTCATTCCAAGAAAATTGGAAACGAATTCATTGGAGAAGTTACTCCTTAGGCGTTGTTCTGAAGTTTCAATGCTCCCAGAGTTTGGGGAAGGCATGAAAACATTATCATTGCTTGACGTGAGTTATACTGCTGTAAGGGGACTTCCTCAGTCATTTGGATTTTTGACCGGTCTTAGAGATTTGAAAATGAGAAATTGTGAACATCTTGTTTTGCGCTTGTCTGTCTTCCACCATTTGAAGAATCTAAAAACGGTTGACATGTGTGGTTGCTTAAAACTTTCCAAGGGGCCAAAAAGACTGAATGAAATCGTAGCCTCGGAAAAACACGACATGAGTGAAAATTTCAGAACAGACATGACTCTGTTCAGTGCTATAGTAAGCAATCAAGTCTTCAGCTTTAATCCATCGGCAATAACAGAGTTAGACTTAAGCGCTTGTGGCCTCAGTGATGGATCAATTGTTGAACATTTCAGTGGTCTCTCGTCATTACTTGTGTTAAATCTTGGAGGGAATGATTTTGTTATTCTACCTGATGGTTGGATCTGTAGTTCTATTCGACTACGCTTTCTTTTTCTGAGTGCCTGCAGGAGGCTTAAGTCACTGCCCAAGCTTCCACCACAGTTAATTCGATTAGACGCAGTGGGCTGTAATTCAATGGAACCTTTATCAGAAAGACAATTATGGAATATGGTTTCATCGCTTCACCATGAGTATCGCCATCAAGTTAAATATGAGAACACACTGCTCAAGCACATTGAGGTAGCAGAATATTTTCCCCAGAGAGATTTTTTCGCAATTATTCGGGGATCTGAGATACCATCATGGTTCCCAAATAACGATTATGTTGCTTCAGATTTGTATAGATCTAAATGTGAGTTAGTGATGAACATTCCTCAGCATGTTCGTGCAAGTGAATGGTCCGGACTTGCGGTTTGCATCAAGTTACAAATCATGCCGTGTGTATTTGATAGTTTTCACATTTCATGGAGTAGTAAAGCTCCTGAAGATGATCATTACGTTAGGAAAAAGTGGGCCCATGAAATTCGCGTTGTCGAAAAGGAGGGTCCTCACATCTGCATAATGGTGCTGCATTTGAACGAGAAAACATGTTGGCAACATCTAAGAGGTCATGATAATTGCCTTCATATCAAATTTACCTTTCATTCTCCATCTCGTGAGATGCTCAAGATAGGAGGTTGTGGATGGCGTGTGATGTGTAAAGAAGACTTGGAAGAGTGGAGACACAATAATTATTGGAACAAATCAAGTACTCAAGAAGAGATTGATGATTCTGAGGTCCGCCTTCCTCACACTGCTTTGGACAGAACAATAAAAATTTTTCAATAA 3279 0.3788 MAYRVKGESFSTSSNSTPKWKHDVFLSFAGKDTRLNFTDHLYSAFSQRGIRAFKDDKGIERGEVISQQLFQAIEDSLVAVVVFSQNYANAAWCLDELQKIIDCRNKLGQQVFPIFYGVDPSDVRHLRKSFALALAKHEERFKGSKDKLQKWKNALLEISNLSGWDTSGRPETQVIQDVVEAIWNKLCSKLPSYDDYNLVGMVSRIVEINSLLKIGLGEVLFVGIWGMGGIGKTTLARVVYENISDQFEICCFLADIRETSERKGKVYLQRELLSHVSNIKIKNEFEGKKEIRKYFWNKMVLLVLDDINHVSQLGNLAAIPEWFGEGSRVIITTRDKHLLTSHGVHGIYEIEPMKEDESLKIFSKEAFKKDHPEEGYVELSKSVVEYAGGLPLALQVLGSFLHGRSVLEWEDALDRLKQISDKDVFQILKISYDGLNDEEKALFLDIACFFKGWEKDEVIQILKNTGLHSSIGISILIEKALLVEHHTDFGTCRLEMHDLFQEMGRNIVYQESPSIACRRSRLWKIEDIDEVLENTIGTEAIQSIVLDSSQRDDPEVYWEPHAFSKLFNLRLLVIRRRLELPNGLKCLSSALRVIQWQFCPLEALPLGTPLNKLVDIEMQQSNIKQLWYGVQLVSVNLCGCTSLKVIPRKLETNSLEKLLLRRCSEVSMLPEFGEGMKTLSLLDVSYTAVRGLPQSFGFLTGLRDLKMRNCEHLVLRLSVFHHLKNLKTVDMCGCLKLSKGPKRLNEIVASEKHDMSENFRTDMTLFSAIVSNQVFSFNPSAITELDLSACGLSDGSIVEHFSGLSSLLVLNLGGNDFVILPDGWICSSIRLRFLFLSACRRLKSLPKLPPQLIRLDAVGCNSMEPLSERQLWNMVSSLHHEYRHQVKYENTLLKHIEVAEYFPQRDFFAIIRGSEIPSWFPNNDYVASDLYRSKCELVMNIPQHVRASEWSGLAVCIKLQIMPCVFDSFHISWSSKAPEDDHYVRKKWAHEIRVVEKEGPHICIMVLHLNEKTCWQHLRGHDNCLHIKFTFHSPSREMLKIGGCGWRVMCKEDLEEWRHNNYWNKSSTQEEIDDSEVRLPHTALDRTIKIFQ 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3303 1092 ProSiteProfiles TIR domain profile. 20 190 IPR000157 GO:0007165
Prci2g3303 1092 PRINTS Disease resistance protein signature 721 737 - -
Prci2g3303 1092 PRINTS Disease resistance protein signature 387 401 - -
Prci2g3303 1092 PRINTS Disease resistance protein signature 221 236 - -
Prci2g3303 1092 PRINTS Disease resistance protein signature 294 308 - -
Prci2g3303 1092 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 860 IPR044974 GO:0006952
Prci2g3303 1092 SUPERFAMILY L domain-like 553 874 - -
Prci2g3303 1092 Pfam TIR domain 21 200 IPR000157 GO:0007165
Prci2g3303 1092 Gene3D - 188 345 IPR027417 -
Prci2g3303 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 446 IPR027417 -
Prci2g3303 1092 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Prci2g3303 1092 Gene3D Ribonuclease Inhibitor 541 769 IPR032675 -
Prci2g3303 1092 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Prci2g3303 1092 SUPERFAMILY "Winged helix" DNA-binding domain 423 533 IPR036390 -
Prci2g3303 1092 Gene3D Ribonuclease Inhibitor 770 902 IPR032675 -
Prci2g3303 1092 Gene3D - 16 187 IPR035897 -
Prci2g3303 1092 FunFam Disease resistance protein (TIR-NBS-LRR class) 354 436 - -
Prci2g3303 1092 SMART till_3 21 161 IPR000157 GO:0007165
Prci2g3303 1092 Coils Coil 134 154 - -
Prci2g3303 1092 Gene3D - 353 436 IPR042197 -
Prci2g3303 1092 Pfam NB-ARC domain 209 433 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3303 Prci-Chr2 41831097 41837784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3303 5 771 WRKY Transcription Factor Family AT4G12020 27.791 6.06e-82 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3303 - - pcin:129301954 2193.7