Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3300 ATGGAATATACTGTCTATGGAGAATCTTCGTCCAGCTTTGATGCTTTAAATTCAAGTCCGAAATGGAAATATGATGTTTTCTTGAGCTTTGCAGGAAAAGACACGCGGTTGAAGTTTACAGATCACTTATATGATGCTTTCAATAGAAGTGGGATTAGAGCTTTTAGGGATGATGAAGGAATAGAGAGAGGGGAAGATTTATCCAAGCAACTGCTTCAAGCAATTGAGGATTCTCTGTGTGCAGTTGTTGTTCTTTCTGAAAATTACGCAAATTCAAAATGGTGTTTGAATGAACTCCAAAAGATTCTTGAATGTAGGAATAAATTGGGTCAACGAGTTTTTCCAATTTTCTATGATGTAGATCCATCTGATATAAGGTATCAGAGAAAGAGTTTTGGAGAAGCTTTGGCTAAACATGAAGAGAGATTCAGAAATAACAACCACAATCACAAAGGTCTTGGTTGGTTTTCAGCATTCGTGAACCTCGGTTTGGGCTTCAAACAACGTTTTTGGCTGCCAAACACTCATTCTAACATGTTCAAACTGCAAAATTGGAAAAAAGCTCTGTTTGAAATTGGCAACTTGTCCGGTTGGGATACCAGGGGTCGGCGTGAATCAGATTTGATAAAAAATATTGTTGGAGGGATATGGACTTATTTATGTTCTAAATTACCAACTTATGGTGATAATCTAGTAGGGATTGAATCAAAAATGGTTGATATGATGTCATACCTGGAAATTGGGTTGGATGACGTCTATTTTGTAGGATTGTGGGGTATGGGCGGTATCGGTAAAACAACTCTTGCTAGAGTTGTTTACGATAAAATCTCACATAAATTTGATATGTGTTGCTTCCTTGCTAATGTTAGAGAAACCTCACAAAGAGAAGGTCTAGTTTCTTTACATAGAAAGCTTCTTTCTCATCTCAAAATAAAGAACATGGAAATTGATGATGTGTATGAAGGAAAGAAGATATTACAAAATCTTTTTTTCAATAAAAAGGTTCTTCTTGTCCTTGATGATGTAGATCATATGAAACAAATTCAAATTTTGGCACAAAGTCCAAAGTGGTTTGGTAGAGGAAGTAGAGTAATCATAACAACAAGAGATAGCCACTTGCTCACCACATCTAAAGTGCAAAGAATATATGAGGTGAAAATCATGAAGGAAGAAGAATCTCTTCAACTCTTATCTAACAAAGCATTCAACCAAGATCATCCTAAAATAGATTATTTGGAGCTGTCTATCTCTGTGGTTAAATATACAGGAGGTCTTCCTTTGGCACTTAATGTTTTGGGTTCTTTTCTTTGTGGAAGAAGTAAAGCTGAATGGAGAGATACTTTGGATAGATTGAAGCAAATTCCAGATAATGATATTCTTCAAATACTTAAAATAAGTTATGATGGCTTAAATGAGGAAGAAAAGACAATATTTTTGGATATTGCTTGTTTTTTCAAGGGATGGAGGAAAGCTGAAGTAGCCCAAATTTTGGAAGATTGTGATCTTCACCCGACAATTGGAATGAAAGTTTTGATGGAAAAAGCTCTACTAATTGAAAAGAAAGATCTTTTGGGACACTGTGTTTTAGAAATGCATGATTTACTTGAAGACTTGGGGAGGTATATTATTTGTCAAGAATCTCCCAATGCTGGCCAGCGTAGTAGATTGTGGGAGTTAGAGGACATTAATGAAGTATTGAAAAATAAGAAGGGATCTAAAGCAATGCAAGCTATTGTGTATCGGTATTTAGGTGATGATGTAGTAGTACATCCTCAAGTCTTTTCAGAGACGAGTAATATTAGACTACTCATCTTATCAAGGGATTTCAAGCCTTTTGGTGGTCTCAAATGTCTTCCTAGTGCATTAAAAGTTTTTCAATGGCGAGAATTTCCTTTAGAAACTCTCCCATTTGAAGCTCCGTTGGATAAACTTGTTGATATTCAAATGCATAAGAGCAAAATAAAGAAACTTTGGAATGGGGTACAGTTTATGAAAAAGTTGAAACGCATTGATCTGAGTTATTCCCGATACTTGAACGAAACTCCAGACTTCTCAGAAGTTCCAAATTTAGAAAAACTAATTCTTGAAGGATGCTCATCTCTTGTCAAGGTTCATCCTTCACTTGGAAAACTGCACAAGGTTGTTCTGGTGAACTTGTGCAACTGCAAGAATCTCAAAAGCCTTCCAAGAAAATTGGAAATGAACTCTCTGATAGAATTAAATCTTTTTGGGTGCTCCAAAGTTGAACTGCTCCCAGAGTTTGGGGAAGGTATGAAAAAATTGTCATATCTTGAAATGAGAGACACTTCTGTAACTATACTTCCCGGATCACTTGGGTTCTTGAGCGGTCTTAGATATTTGTATTTGGAGTCCTGCAAAATTCTTAATCTTCACGGGTTGTTGGAGAATCTCAAAGCTCCCCAAGTATCTGGCTTTCATCTAACATCATTAACAATGTTATATTTAAGGGCGTGTGGACTTAGTGATGAATCAATTCCCGATGATTTTGGAAGTTTATCTTCACTTATTTTATTGGATTTGGGGCAAAATAATTTTGTCAATCTGCCTGCCGGTTGCTTCTCTAGTCTTTTTCGACTCCACTATCTTTTTTTAGATGGTTGCTTTAGGCTTAAGTCATTGCCAAAGCTTCCACCACGGTTAAGTCGATTGGATGCAATGGATTGTGTTTCAATGGAATCTTTATCAAATGTTCAGTTATGGGAACCAGTTTCATCACTTAACCACGAGCACCGCTGCCAAACTGGATATGTGAATCCACAGCTCAAGCATATTGAGTCAGAATATCTTCCTCAGAGAGATTTTCTTGCAATTATTCCGGGATCGATAATACCATCATGGTTTCCAAACAAAGATTATCCTTTGTGGAATGATGAGGATTATAGCTTGTACCATGATGGAGAGGATTACATAATAAAGGTGAGGATACCTCAATATTTCCGTGAAAGTGAATGGTCCGGAATTGTTGTATGCCTGTGTCTCTCAAGTGAGAACAGCGATGAGAAAGCGTGGATTTCATGGAGTAGTAAAGCTCCTGAAGATAATAATTTTGTATGGAAAGGGTGGGAACATCGTTTTGAACTGAGTAGGTCTCTTGACCTTGATGATCTCTGCATAATGGTGTTCGAGTTAAATGAGAAAACATGTTGGCAACATCTAAGAGGTCATAACAATTCTCTTCACATTAAACTTAGCCTTCGTAGTTATCGTTGTAATGCATATTCGAGGGGTCAAATATTGGGTTGTGGATGGCGGGTTTTATGTGAAGAAGACATGAAACAGTGGCGAAACAACATCCATTGTTTCAACAGATTAAGAGCTGTTGGCATTTCTCAAGTCTGCCTTCCTGACTACGTATTGCACAGAAGTATAGAAATTAATAGCAAGCCTACCAGGTGCATTAATTACAAGAGGGGCAAGGAGAGGAACAGGTGA 3453 0.3713 MEYTVYGESSSSFDALNSSPKWKYDVFLSFAGKDTRLKFTDHLYDAFNRSGIRAFRDDEGIERGEDLSKQLLQAIEDSLCAVVVLSENYANSKWCLNELQKILECRNKLGQRVFPIFYDVDPSDIRYQRKSFGEALAKHEERFRNNNHNHKGLGWFSAFVNLGLGFKQRFWLPNTHSNMFKLQNWKKALFEIGNLSGWDTRGRRESDLIKNIVGGIWTYLCSKLPTYGDNLVGIESKMVDMMSYLEIGLDDVYFVGLWGMGGIGKTTLARVVYDKISHKFDMCCFLANVRETSQREGLVSLHRKLLSHLKIKNMEIDDVYEGKKILQNLFFNKKVLLVLDDVDHMKQIQILAQSPKWFGRGSRVIITTRDSHLLTTSKVQRIYEVKIMKEEESLQLLSNKAFNQDHPKIDYLELSISVVKYTGGLPLALNVLGSFLCGRSKAEWRDTLDRLKQIPDNDILQILKISYDGLNEEEKTIFLDIACFFKGWRKAEVAQILEDCDLHPTIGMKVLMEKALLIEKKDLLGHCVLEMHDLLEDLGRYIICQESPNAGQRSRLWELEDINEVLKNKKGSKAMQAIVYRYLGDDVVVHPQVFSETSNIRLLILSRDFKPFGGLKCLPSALKVFQWREFPLETLPFEAPLDKLVDIQMHKSKIKKLWNGVQFMKKLKRIDLSYSRYLNETPDFSEVPNLEKLILEGCSSLVKVHPSLGKLHKVVLVNLCNCKNLKSLPRKLEMNSLIELNLFGCSKVELLPEFGEGMKKLSYLEMRDTSVTILPGSLGFLSGLRYLYLESCKILNLHGLLENLKAPQVSGFHLTSLTMLYLRACGLSDESIPDDFGSLSSLILLDLGQNNFVNLPAGCFSSLFRLHYLFLDGCFRLKSLPKLPPRLSRLDAMDCVSMESLSNVQLWEPVSSLNHEHRCQTGYVNPQLKHIESEYLPQRDFLAIIPGSIIPSWFPNKDYPLWNDEDYSLYHDGEDYIIKVRIPQYFRESEWSGIVVCLCLSSENSDEKAWISWSSKAPEDNNFVWKGWEHRFELSRSLDLDDLCIMVFELNEKTCWQHLRGHNNSLHIKLSLRSYRCNAYSRGQILGCGWRVLCEEDMKQWRNNIHCFNRLRAVGISQVCLPDYVLHRSIEINSKPTRCINYKRGKERNR 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3300 1150 SMART LRR_typ_2 839 862 IPR003591 -
Prci2g3300 1150 SMART LRR_typ_2 781 803 IPR003591 -
Prci2g3300 1150 SMART LRR_typ_2 814 838 IPR003591 -
Prci2g3300 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 481 IPR027417 -
Prci2g3300 1150 Pfam TIR domain 23 171 IPR000157 GO:0007165
Prci2g3300 1150 SMART till_3 23 195 IPR000157 GO:0007165
Prci2g3300 1150 Pfam NB-ARC domain 252 454 IPR002182 GO:0043531
Prci2g3300 1150 Gene3D - 221 383 IPR027417 -
Prci2g3300 1150 Pfam Leucine Rich Repeat 643 662 IPR011713 -
Prci2g3300 1150 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 795 IPR044974 GO:0006952
Prci2g3300 1150 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 150 IPR035897 -
Prci2g3300 1150 ProSiteProfiles TIR domain profile. 22 220 IPR000157 GO:0007165
Prci2g3300 1150 FunFam Disease resistance protein (TIR-NBS-LRR class) 389 471 - -
Prci2g3300 1150 Gene3D - 18 220 IPR035897 -
Prci2g3300 1150 SUPERFAMILY L domain-like 531 912 - -
Prci2g3300 1150 Gene3D Ribonuclease Inhibitor 586 753 IPR032675 -
Prci2g3300 1150 Gene3D Ribonuclease Inhibitor 754 932 IPR032675 -
Prci2g3300 1150 PRINTS Disease resistance protein signature 254 269 - -
Prci2g3300 1150 PRINTS Disease resistance protein signature 422 436 - -
Prci2g3300 1150 PRINTS Disease resistance protein signature 662 678 - -
Prci2g3300 1150 PRINTS Disease resistance protein signature 329 343 - -
Prci2g3300 1150 Gene3D - 387 471 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3300 Prci-Chr2 41655756 41663506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3300 24 857 WRKY Transcription Factor Family AT4G12020 29.742 3.58e-87 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3300 - - pcin:129303509 2326.98