LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g3299	ATGGCGAACACTACCCTGGGAGAATCTTCCTCAACCTCTGGTGCCCCTAATTCAACTCCGATTGGGAAATATGACGTTTTTCTGAGTTTCAGAGGAGAAGATACTCGCTTGAAGTTTACAGATCACTTGTATCATGCTCTCACTAGAAGTGGGCTCAAAGCTTTTAGAGATGATGAAAAACTTCAAAAAGGAGAAGTTTTATCACCACAGCTCATTCAAGCAATTAAGGATTCTCTCTGTGCAGTTGTGGTTCTCTCTCAAAATTATGCAGATTCCAAATGGTGTTTGATTGAACTTCAACAAATTCTTGAAACCATGAACAACATGGGTCGACGGGTTTTTCCAATCTTCTATGATGTAGATCCATCTGATGTGAGAAATCAAAGAAAAAGATTCGGAGAAGCTCTAGCCAATCATGAAGAGAGACTTAGAGGAGAAGGGGACACAACGACAGTGCAGATTTGGAAAAACTCTTTGTCTGAAATTGGAAACATGTCTGGTTGGGACACCAGAAATCGGCCTGAAGTACGACTTATTGAAGAAATGGTTGGAGAAGTATGGAAATATCTATGGTCCAAGTTACCATCTTATGATGATAACCTGGTTGGAACAGAGCGAAGAATGGTTGATCTAATGTCATGCTTGGAGATTGAGTTGGATGACATTCACTCTGTAGGAATATGGGGTATGGGCGGCTCTGGCAAAACGACTCTTGCAAAAGTTGTTTATGAAAAAATCTCAGAGAGATTTGAAATGTGTTCATTTCTTGCCAATGTTAGAGAAACTTTGCAAACAAAAGGCCTAGTCTCTTTGCAGAAAAGTCTTCTTTCTCAAATTGGAATCAAGGAGAAAATTTATGATGAATATGAAGGAATGAAGATGATAAAAAAGCTTTTCCGCAATAAAAAAGTTCTTCTTGTCCTTGATGATTTAGATGACGAGAATCCATTAGAGAAGTTGGCTGGAGGTCTAGATTGGTTTGGTAAAGGGAGCAGAATAATTATCACAACAAGAAATAGTCATGTGGTCACCTCATTCGAAGGGAAATTATATGAGATGAAAGCCATGAAGGAAGATGAGGCTCTTCAACTCTTTTCAAAGAAAGCATTCAAGAAAGATCATCCCAAAGGGGATTATCTAGAGTTGTCTAAAGCTGTGGTTGCATATGCAGGAGGTCTTCCTTTGGCACTTGAAGTTTTGGGTTCTTTTCTTTACAAAAGAAGTATAGATGGGTGGATTGATACTTTGAATAAATTGAAGCAAAATCCAAATACAAATATTTTTAAAACACTTAAAATAAGCTTTGATGGATTAGATGAGAAAGAAAAGACAATATTTTTGGATATTGCTTGTTTTTTCCGGGGTTGGAGGAAAGATAAAGTGACCCTACTTTTGGATGGTTGTGATCTAAACCCAATAATAGGAATAGAAGTCTTGATTGAAAAAACTTTACTAGTTGAAAGGAAATATTATTCAGAAGATCTCTATTTAGATATGCATGATTTACTTGAAGAGTTGGCTAAGGATATCATTCGTCAAGAATCTCCCAATCCTGGCAGCCGTAGCAGGTTGTGGGAGTTTGAGGACTTTAAGGAAGTATTGGAAAATAACAACGGATCTAAAGCAATAGAAGCTGTTTGTATGCGACATATTTTGCTGGACCCTGGGAACGAGCATAAAATAGAAGTACACCCTAAAGCCTTTTCAAAGATGAATAATATTAGATTGCTCATAATAGACGGCCTTTTTCATGAGCTCATCTTGCCAAGGGAATTGGAACTTCCTAGTGCATTGAAAGTTGTTTGCTGGCCACAATTTTCTCTTGAAGCTCTCCCCTTTCCCTTCATAAAGCAACTTTGGAATGGCAGGCAGTCTATGAAAAAGTTGAAACATATTGATCTGAGCCATTCTGACGATTTGATCGAAACTCCAGACTTCTCAGGGGTTCCAAATTTAGAACATTTAAATCTTAAAGGGTGCAAATCCCTTGTCAAGGTTCATCCATCATTTGGAGAGTTGAAAAGACTTGTTGAGATTAACTTGAGTGGGTGTTTCAATCTTGAAATCCTACCAAGAAAATGGGGAACAAGTTCTTTGAAAAGGTTAGATCTATGTCAGTGTGAAAAAGTTGTGGTGCTCCCAGAGTTTGGAGATGGTTCGAATAAACTATCATATCTCGATGTGCGTTGTACTAAAGTTGCGGTGCTCCCAAAGTTTGGGGAAGGCTCAAGTCATTGCCATGGCTTCCACCACGGTTGA	2259	0.3842	MANTTLGESSSTSGAPNSTPIGKYDVFLSFRGEDTRLKFTDHLYHALTRSGLKAFRDDEKLQKGEVLSPQLIQAIKDSLCAVVVLSQNYADSKWCLIELQQILETMNNMGRRVFPIFYDVDPSDVRNQRKRFGEALANHEERLRGEGDTTTVQIWKNSLSEIGNMSGWDTRNRPEVRLIEEMVGEVWKYLWSKLPSYDDNLVGTERRMVDLMSCLEIELDDIHSVGIWGMGGSGKTTLAKVVYEKISERFEMCSFLANVRETLQTKGLVSLQKSLLSQIGIKEKIYDEYEGMKMIKKLFRNKKVLLVLDDLDDENPLEKLAGGLDWFGKGSRIIITTRNSHVVTSFEGKLYEMKAMKEDEALQLFSKKAFKKDHPKGDYLELSKAVVAYAGGLPLALEVLGSFLYKRSIDGWIDTLNKLKQNPNTNIFKTLKISFDGLDEKEKTIFLDIACFFRGWRKDKVTLLLDGCDLNPIIGIEVLIEKTLLVERKYYSEDLYLDMHDLLEELAKDIIRQESPNPGSRSRLWEFEDFKEVLENNNGSKAIEAVCMRHILLDPGNEHKIEVHPKAFSKMNNIRLLIIDGLFHELILPRELELPSALKVVCWPQFSLEALPFPFIKQLWNGRQSMKKLKHIDLSHSDDLIETPDFSGVPNLEHLNLKGCKSLVKVHPSFGELKRLVEINLSGCFNLEILPRKWGTSSLKRLDLCQCEKVVVLPEFGDGSNKLSYLDVRCTKVAVLPKFGEGSSHCHGFHHG	752

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g3299	752	Pfam	TIR domain	23	196	IPR000157	GO:0007165
	Prci2g3299	752	Gene3D	-	356	439	IPR042197	-
	Prci2g3299	752	PRINTS	Disease resistance protein signature	298	312	-	-
	Prci2g3299	752	PRINTS	Disease resistance protein signature	390	404	-	-
	Prci2g3299	752	PRINTS	Disease resistance protein signature	224	239	-	-
	Prci2g3299	752	PRINTS	Disease resistance protein signature	624	640	-	-
	Prci2g3299	752	SUPERFAMILY	"Winged helix" DNA-binding domain	426	535	IPR036390	-
	Prci2g3299	752	FunFam	Disease resistance protein (TIR-NBS-LRR class)	357	439	-	-
	Prci2g3299	752	ProSiteProfiles	TIR domain profile.	22	194	IPR000157	GO:0007165
	Prci2g3299	752	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	449	IPR027417	-
	Prci2g3299	752	SMART	till_3	23	165	IPR000157	GO:0007165
	Prci2g3299	752	SUPERFAMILY	L domain-like	553	738	-	-
	Prci2g3299	752	Gene3D	Ribonuclease Inhibitor	547	743	IPR032675	-
	Prci2g3299	752	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	24	716	IPR044974	GO:0006952
	Prci2g3299	752	Pfam	NB-ARC domain	220	425	IPR002182	GO:0043531
	Prci2g3299	752	Gene3D	-	21	190	IPR035897	-
	Prci2g3299	752	SUPERFAMILY	Toll/Interleukin receptor TIR domain	23	168	IPR035897	-
	Prci2g3299	752	Gene3D	-	191	355	IPR027417	-
	Prci2g3299	752	FunFam	Disease resistance protein (TIR-NBS-LRR class)	21	192	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g3299	Prci-Chr2	41581235	41587960	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g3299	24	716	WRKY Transcription Factor Family	AT4G12020	31.319	4.65e-90	308

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g3299	-		-	pcin:129303275	988.408