Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3298 ATGGCGAACACTACCCTGGGAGAATCTTCCTCAACCTCTGGTGCCCCTAATTCAACTCCGATTGGGAAATATGACGTTTTTCTGAGTTTCAGAGGAGAAGATACTCGCTTGAAGTTTACAGATCACTTGTATCATGCTCTCACTAGAAGTGGGCTCAAAGCTTTTAGAGATGATGAAAAACTTCAAAAAGGAGAAGTTTTATCACCACAGCTCATTCAAGCAATTAAGGATTCTCTCTGTGCAGTTGTGGTTCTCTCTCAAAATTATGCAGATTCCAAATGGTGTTTGATTGAACTTCAACAAATTCTTGAAACCATGAACAACATGGGTCGACGGGTTTTTCCAATCTTCTATGATGTAGATCCATCTGATGTGAGAAATCAAAGAAAAAGATTCGGAGAAGCTCTAGCCAATCATGAAGAGAGACTTAGAGGAGAAGGGGACACAACGACAGTGCAGATTTGGAAAAACTCTTTGTCTGAAATTGGAAACATGTCTGGTTGGGACACCAGAAATCGGCCTGAAGTACGACTTATTGAAGAAATGGTTGGAGAAGTATGGAAATATCTATGGTCCAAGTTACCATCTTATGATGATAACCTGGTTGGAACAGAGCGAAGAATGGTTGATCTAATGTCATGCTTGGAGATTGAGTTGGATGACATTCACTCTGTAGGAATATGGGGTATGGGCGGCTCTGGCAAAACGACTCTTGCAAAAGTTGTTTATGAAAAAATCTCAGAGAGATTTGAAATGTGTTCATTTCTTGCCAATGTTAGAGAAACTTTGCAAACAAAAGGCCTAGTCTCTTTGCAGAAAAGTCTTCTTTCTCAAATTGGAATCAAGGAGAAAATTTATGATGAATATGAAGGAATGAAGATGATAAAAAAGCTTTTCCGCAATAAAAAAGTTCTTCTTGTCCTTGATGATTTAGATGACGAGAATCCATTAGAGAAGTTGGCTGGAGGTCTAGATTGGTTTGGTAAAGGGAGCAGAATAATTATCACAACAAGAAATAGTCATGTGGTCACCTCATTCGAAGGGAAATTATATGAGATGAAAGCCATGAAGGAAGATGAGGCTCTTCAACTCTTTTCAAAGAAAGCATTCAAGAAAGATCATCCCAAAGGGGATTATCTAGAGTTGTCTAAAGCTGTGGTTGCATATGCAGGAGGTCTTCCTTTGGCACTTGAAGTTTTGGGTTCTTTTCTTTACAAAAGAAGTATAGATGGGTGGATTGATACTTTGAATAAATTGAAGCAAAATCCAAATACAAATATTTTTAAAACACTTAAAATAAGCTTTGATGGATTAGATGAGAAAGAAAAGACAATATTTTTGGATATTGCTTGTTTTTTCCGGGGTTGGAGGAAAGATAAAGTGACCCTACTTTTGGATGGTTGTGATCTAAACCCAATAATAGGAATAGAAGTCTTGATTGAAAAAACTTTACTAGTTGAAAGGAAATATTATTCAGAAGATCTCTATTTAGATATGCATGATTTACTTGAAGAGTTGGCTAAGGATATCATTCGTCAAGAATCTCCCAATCCTGGCAGCCGTAGCAGGTTGTGGGAGTTTGAGGACTTTAAGGAAGTATTGGAAAATAACAACGGATCTAAAGCAATAGAAGCTGTTTGTATGCGACATATTTTGCTGGACCCTGGGAACGAGCATAAAATAGAAGTACACCCTAAAGCCTTTTCAAAGATGAATAATATTAGATTGCTCATAATAGACGGCCTTTTTCATGAGCTCATCTTGCCAAGGGAATTGGAACTTCCTAGTGCATTGAAAGTTGTTTGCTGGCCACAATTTTCTCTTGAAGCTCTCCCCTTTCCCTTCATAAAGCAACTTTGGAATGGCAGGCAGGCTCAAGTCATTGCCATGGCTTCCACCACGGTTGATTCGATTAAGTGCAGTTGGTTGTGA 1932 0.3835 MANTTLGESSSTSGAPNSTPIGKYDVFLSFRGEDTRLKFTDHLYHALTRSGLKAFRDDEKLQKGEVLSPQLIQAIKDSLCAVVVLSQNYADSKWCLIELQQILETMNNMGRRVFPIFYDVDPSDVRNQRKRFGEALANHEERLRGEGDTTTVQIWKNSLSEIGNMSGWDTRNRPEVRLIEEMVGEVWKYLWSKLPSYDDNLVGTERRMVDLMSCLEIELDDIHSVGIWGMGGSGKTTLAKVVYEKISERFEMCSFLANVRETLQTKGLVSLQKSLLSQIGIKEKIYDEYEGMKMIKKLFRNKKVLLVLDDLDDENPLEKLAGGLDWFGKGSRIIITTRNSHVVTSFEGKLYEMKAMKEDEALQLFSKKAFKKDHPKGDYLELSKAVVAYAGGLPLALEVLGSFLYKRSIDGWIDTLNKLKQNPNTNIFKTLKISFDGLDEKEKTIFLDIACFFRGWRKDKVTLLLDGCDLNPIIGIEVLIEKTLLVERKYYSEDLYLDMHDLLEELAKDIIRQESPNPGSRSRLWEFEDFKEVLENNNGSKAIEAVCMRHILLDPGNEHKIEVHPKAFSKMNNIRLLIIDGLFHELILPRELELPSALKVVCWPQFSLEALPFPFIKQLWNGRQAQVIAMASTTVDSIKCSWL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3298 643 Pfam TIR domain 23 196 IPR000157 GO:0007165
Prci2g3298 643 Pfam NB-ARC domain 220 425 IPR002182 GO:0043531
Prci2g3298 643 PRINTS Disease resistance protein signature 390 404 - -
Prci2g3298 643 PRINTS Disease resistance protein signature 298 312 - -
Prci2g3298 643 PRINTS Disease resistance protein signature 224 239 - -
Prci2g3298 643 ProSiteProfiles TIR domain profile. 22 194 IPR000157 GO:0007165
Prci2g3298 643 SMART till_3 23 165 IPR000157 GO:0007165
Prci2g3298 643 Gene3D - 21 190 IPR035897 -
Prci2g3298 643 Gene3D - 191 355 IPR027417 -
Prci2g3298 643 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 192 - -
Prci2g3298 643 FunFam Disease resistance protein (TIR-NBS-LRR class) 357 439 - -
Prci2g3298 643 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 615 IPR044974 GO:0006952
Prci2g3298 643 SUPERFAMILY "Winged helix" DNA-binding domain 426 535 IPR036390 -
Prci2g3298 643 Gene3D - 356 439 IPR042197 -
Prci2g3298 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 449 IPR027417 -
Prci2g3298 643 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 168 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3298 Prci-Chr2 41581235 41587960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3298 24 633 WRKY Transcription Factor Family AT4G12020 29.827 6.40e-74 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3298 - - pcin:129303275 845.114