Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3293 ATGTCAAGTGGAGCAACACATTGGTGTTATGAATGTGGACATCCGATTGTGCTTGAAGGGAGGGAAGTCATTTGCCCTTACTGTCATGAAGGCTTTGTGCAAGAACTCGAGATGCATGCCTCTCAACCATTTAATGCTATGGAAGAGTTTCATCGAATGCCCTACCTTTTTGATGCCATGTGTGCTTTCATGACGCAGAGAATGGCTGGGCCGTACCTAAACTTTGATATTAGAGAAAGGTCTGATACTGCACTATTTCCTGAATGGAGTCAAGATTTTTTCAATTCTGGCCCTTCTTTGATGTTTCATGGTCCTAGAGGGGATACTAGGCCTGTTGATTTCGGTGGTTTATTGATGGCCCCTGGACTCGAAGCATTCATTCAACAGCTGACTATGAATGATCACAAAGGTCCTCCTGCAGCCTCACATTCCTCGATCAATGCAATGCCTACCATTAAGATCACACGAGCACATCTTCACTGTGATTCACACTGTCCAGTCTGTAAAGAGAGATTCGAACTTGGGTCTGAGGCTAGGCAAATGCCCTGTAACCATATTTATCACTCTGACTGTATTGTTCCTTGGTTGGTTCAGCACAACTCTTGTCCTGTTTGCCGTGTTGAGCTGCCAACTCCAGGACAGGGAAGTTCCAGTGGAGGAAGGAATGCCAGTAGCAGCAAGGGACCGTGA 690 0.4594 MSSGATHWCYECGHPIVLEGREVICPYCHEGFVQELEMHASQPFNAMEEFHRMPYLFDAMCAFMTQRMAGPYLNFDIRERSDTALFPEWSQDFFNSGPSLMFHGPRGDTRPVDFGGLLMAPGLEAFIQQLTMNDHKGPPAASHSSINAMPTIKITRAHLHCDSHCPVCKERFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRVELPTPGQGSSSGGRNASSSKGP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3293 229 Pfam Ring finger domain 164 206 IPR001841 -
Prci2g3293 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 212 IPR013083 -
Prci2g3293 229 FunFam E3 ubiquitin-protein ligase RING1-like 128 212 - -
Prci2g3293 229 ProSiteProfiles Zinc finger RING-type profile. 165 206 IPR001841 -
Prci2g3293 229 CDD RING-H2_RNF126-like 165 206 - -
Prci2g3293 229 SMART ring_2 165 205 IPR001841 -
Prci2g3293 229 SUPERFAMILY RING/U-box 145 212 - -
Prci2g3293 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3293 Prci-Chr2 41573755 41576934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3293 112 223 C3H Transcription Factor Family AT5G01980 40.351 6.63e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3293 K11982 - gmx:100813674 285.804