Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3289 ATGGATTCTGACGAAGAAAATAGAGTACTTTTCTGTCAAGAATTTAAGCCTCGTGATCATGAATTTGATGATCCGGTGACTCAGGACGCGAAGGAGAACCAAGGGTTCGATCAGGAATCTTCCGAAGAGGTAGAGAAGATGACGGTGATGATCAGCGAAAAGCCTTTTTCGTCTTACTCCGAGCTCCGAGAAGGAAAATCTAAGAGTAAAACTAATGGAGCTCCAGGTTCAGCTTCAGGTTCAGCATCATCAGTTCGAGTTTGTGATTTCTGTGGAAGACAGTTCAGTTCTGGAAAAGCCCTAGGAGGTCACAGAAGATATCACATTCAAGCTCAGAAAAAAATGGAGGCTCAACAGCAACGAGAAAAGGTCAATCATTCTTCTGATCAATGTCCTTCTTCAAATAATTACTATACCCTAAGAACCAAGCCCAGCAATAACAATATGTCTGAGGATTTTGCTGGCGGCGACGATAATCGCATCAAATCGAACATTGGAAATCTCAACAATTCTTCAACATCTTTCCGTTGTTGTGTTTGCGAGAAGGATTTTCCATCGAAGAAATCATTGTTCGGCCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCTTTCACTGATAACGCTCCATTAGCTTCTTCTTCTTCTCCAGAAGCACAGTTCAAAGCATCAGCTCAAGATCGATATCATGATAATGACGTCGGCGAAGCTAATCTGAACAACAACAATGGATCGTCATCTTCAAGTTTAGAAGAAGGCGGAGCTACTGCAATAGTTGATCTTTCTTTGTCTTGTTCTGGAAGCTGGCTCAAGAAAGATCGAAGAGGAAGAGGAAGCTTTGGAGCTGCACAAGCAGCTCAAACCCTTATGTATATGTATTCCTTTGGTAATTACTTTCGTCATCTTCCTCCTCCAGACCCTCCTGCAACAGTATTATTACCAGTGAAGAAAAGGAAGAAGAATGTGAACGATGTTATTAATTCTTCATCACCATTGGCTGGGAAACATAGCTTGAATTGCACTGAGAAATTAGAGGGCATCAGTGAGAACAAGTTGAAACCTGAGAATGATGATGATGATGAAATCTGGAAGATGAAGGTGATGAGTTTAGTGAAAGAGAAGAAAAAGATTAAGAAGAACAAGAAGAATAATTCATCAGGTGAAGGAGAATTGCTGATAAGAACTCTGAAGGAAGAAGTGAAGCCTGCACAAAGCTATGTATGCAAAATCTGTGATAAATCCTTCTCAACTTTTCAAGCCTTAGGAGGACATAGATCCAAACACAATAGAGGAAAGAACATTGTTATCAGCTTGAAGGGCAAGGAACAAGGAGAAGAGGAAGAGGAAGAAGAACCACACAAGGTTTGTATCAATGGAGCTAATTTGTCAGCTGGTGCAAGATTGAGTGAAGAAGAAGAAGAAGCAGCGTCGCTGATAAGTGAAGAGAGGTTAGTGTCAAGTTCGAATAATCAGGAGAATAACAGCAATAACGAAGAGGAAATGGAAGAGGCAAGTCATCAATCTGGTTCGAAAATTCTGGATTTTGATCTGAATGTGCCTTATGTTTCGGAGCACGAAGAAACTGACAAGTCAACATCATTTTATGAGTAA 1623 0.4079 MDSDEENRVLFCQEFKPRDHEFDDPVTQDAKENQGFDQESSEEVEKMTVMISEKPFSSYSELREGKSKSKTNGAPGSASGSASSVRVCDFCGRQFSSGKALGGHRRYHIQAQKKMEAQQQREKVNHSSDQCPSSNNYYTLRTKPSNNNMSEDFAGGDDNRIKSNIGNLNNSSTSFRCCVCEKDFPSKKSLFGHMRSHPEREWRGMNPPFTDNAPLASSSSPEAQFKASAQDRYHDNDVGEANLNNNNGSSSSSLEEGGATAIVDLSLSCSGSWLKKDRRGRGSFGAAQAAQTLMYMYSFGNYFRHLPPPDPPATVLLPVKKRKKNVNDVINSSSPLAGKHSLNCTEKLEGISENKLKPENDDDDEIWKMKVMSLVKEKKKIKKNKKNNSSGEGELLIRTLKEEVKPAQSYVCKICDKSFSTFQALGGHRSKHNRGKNIVISLKGKEQGEEEEEEEPHKVCINGANLSAGARLSEEEEEAASLISEERLVSSSNNQENNSNNEEEMEEASHQSGSKILDFDLNVPYVSEHEETDKSTSFYE 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3289 540 MobiDBLite consensus disorder prediction 1 49 - -
Prci2g3289 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 410 437 IPR013087 -
Prci2g3289 540 MobiDBLite consensus disorder prediction 524 540 - -
Prci2g3289 540 MobiDBLite consensus disorder prediction 470 540 - -
Prci2g3289 540 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Prci2g3289 540 MobiDBLite consensus disorder prediction 211 226 - -
Prci2g3289 540 ProSitePatterns Zinc finger C2H2 type domain signature. 412 432 IPR013087 -
Prci2g3289 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Prci2g3289 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Prci2g3289 540 MobiDBLite consensus disorder prediction 1 83 - -
Prci2g3289 540 MobiDBLite consensus disorder prediction 119 156 - -
Prci2g3289 540 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Prci2g3289 540 Pfam C2H2-type zinc finger 86 108 - -
Prci2g3289 540 Pfam C2H2-type zinc finger 175 199 - -
Prci2g3289 540 Pfam C2H2-type zinc finger 410 432 - -
Prci2g3289 540 MobiDBLite consensus disorder prediction 198 255 - -
Prci2g3289 540 Gene3D Classic Zinc Finger 86 197 - -
Prci2g3289 540 SMART c2h2final6 86 108 IPR013087 -
Prci2g3289 540 SMART c2h2final6 410 432 IPR013087 -
Prci2g3289 540 SMART c2h2final6 175 197 IPR013087 -
Prci2g3289 540 MobiDBLite consensus disorder prediction 485 499 - -
Prci2g3289 540 MobiDBLite consensus disorder prediction 239 255 - -
Prci2g3289 540 SUPERFAMILY beta-beta-alpha zinc fingers 175 432 IPR036236 -
Prci2g3289 540 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 30 130 IPR044653 GO:0003700
Prci2g3289 540 MobiDBLite consensus disorder prediction 124 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3289 Prci-Chr2 41499471 41501185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3289 88 208 C2H2 Transcription Factor Family AT2G26940 32.520 3.57e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci2g3289 zf-C2H2_6 7.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3289 - - pcin:129302761 966.452