Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3288 ATGATGGGTGGAGGGGATGCTCCAAAAATGCCCAAAGTTCGGCGGTCCATGTTTGCAGCTGAAGAAGCAAGTTACCAAGGTAATGTTGGAGGAGAAGTACCTCTGAAGAAAGGCCCTTGGACAGCAGCAGAGGATGCAATTTTAATAGATTATGTCAAAAAATATGGGGAAGGAAATTGGAATGCAGTCCAAAAGAACTCAGGCCTTGCCCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCAAATCACTTGAGACCAGATTTAAGAAAGGGTACATTTACTGAAGAGGAGGAGCGTCGAATCATTGAGCTCCATGCTAAGATGGGAAACAAGTGGGCCCGGATGGCGACAGAGTTGCCTGGACGTACGGATAATGAGATAAAGAATTACTGGAATACTAGAATTAAGAGAATGCAGCGAGCTGGATTACCAATTTATCCTCCTGAGATATGCCAGCAGGTTCGCAGTCAGGAAAATCCAAATGTGGGTACACTGATGAGTGGAGCCAGCCAGCACTCTGATATCCCACAAGATGGCAACTTCAATGTCCCTGAACTGGAATTCAAAGATTATGATTTCAGCCGGGGTTATCTACCATATGGACCCTCCATTTTAGATATTCCTGAAAGCAGTCTGTTTGAACAAACTGCAGGTCCGCCGCATAATGATGTTTTATTGTATGGAAACCCCTCGAAACGCCTTAGGGAGTCAGAGATGCTTTATGATAGATTGGACAACAGTAGCAGCTATATGATCCCAGCGTTTGATAAGTTTGTGGATTGTACTGCTGAGCCACCTCATCTTTTGTCTTCTCCTCCAAGCAACCTGTCCCTTGATGCCAATGATCAGTTTCGTGGCAATAATTTCCACGGCAGCCATGCCGCTTTAAATGGCAACACCTCTTCTTCGGCGCCCATATCTGAGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTAGCTGGGATGCTAATGTATCCCCGCTTCCTTCACTGGAGTCTGTTGATACAATGTTTCAGCCTTCTCCAGTTGAACACTATCAGTCATGTACTGTTACTCCTGATAGTAATGGTTTGTTAGAATCGATCATTTATGAATCCAAGCTTCCGAGAGGTTCAAGTAATGATTTGTTTTGGAAGACCCCTGATGATTGCATGCTGAATGTGACTAAAACTGAGACAGAATGGGACCAACTTGGGGATACAAATTCACCCTTAGGTCACTCTTCTGCCTCAGTTCTTACAGATTATACTCCTCCTGTTAGCATTGGCTCAGTTGACGACACCTACTTCATCGAACACACAAAAGCGGGACATGATTTGAAGCAGGAAGCAGTTTCACAGGATCCATCAAATGTTTCCAAGAGGAAAGAAACTTCAGGTCAGATAGAGATGACAAGGCCGGATGCTTTGCTTGACATGTGTTGGTTTGGGAACGATACCAGTTTCCGCTAG 1470 0.449 MMGGGDAPKMPKVRRSMFAAEEASYQGNVGGEVPLKKGPWTAAEDAILIDYVKKYGEGNWNAVQKNSGLARCGKSCRLRWANHLRPDLRKGTFTEEEERRIIELHAKMGNKWARMATELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPEICQQVRSQENPNVGTLMSGASQHSDIPQDGNFNVPELEFKDYDFSRGYLPYGPSILDIPESSLFEQTAGPPHNDVLLYGNPSKRLRESEMLYDRLDNSSSYMIPAFDKFVDCTAEPPHLLSSPPSNLSLDANDQFRGNNFHGSHAALNGNTSSSAPISEAMKLELPSLQYLETQQGSWDANVSPLPSLESVDTMFQPSPVEHYQSCTVTPDSNGLLESIIYESKLPRGSSNDLFWKTPDDCMLNVTKTETEWDQLGDTNSPLGHSSASVLTDYTPPVSIGSVDDTYFIEHTKAGHDLKQEAVSQDPSNVSKRKETSGQIEMTRPDALLDMCWFGNDTSFR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3288 489 Gene3D - 92 160 - -
Prci2g3288 489 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Prci2g3288 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Prci2g3288 489 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Prci2g3288 489 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 484 - -
Prci2g3288 489 FunFam MYB-related transcription factor 36 89 - -
Prci2g3288 489 Gene3D - 36 89 - -
Prci2g3288 489 CDD SANT 39 84 IPR001005 -
Prci2g3288 489 SMART sant 89 137 IPR001005 -
Prci2g3288 489 SMART sant 36 86 IPR001005 -
Prci2g3288 489 SUPERFAMILY Homeodomain-like 34 131 IPR009057 -
Prci2g3288 489 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Prci2g3288 489 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Prci2g3288 489 FunFam Transcription factor GAMYB 92 138 - -
Prci2g3288 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3288 Prci-Chr2 41467129 41475234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3288 35 425 MYB Transcription Factor Family AT5G06100 40.191 2.07e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g3288 Myb_DNA-bind_6 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3288 K09422 - qsa:O6P43_014646 540.806