Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3278 ATGAGCCAGTCTAAAATCAAGCGTCGTATAGGTAAATATGAGGTGGGAACGACCATTGGTGAGGGAACATTTGCAAAAGTGAAATTTGCTAGGAACTCTGAGACTGGGGAGGCTGTGGCTATTAAAATTCTGGAGAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAACAGATCAGGCGGGAAATAGCAACAATGAAGTTAATCAAGCATCCAAATGTTGTTCAATTGTATGAGGTAATGGGAAGCAGGACAAAAATATATATAGTTTTGGAGTTTGTTACTGGAGGGGAGCTCTTTGACAAAATTGTAAACAATGGGCGAATGAATGAAAAAGAAGCACGTAGTTATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCATAGCAGGGGTGTCTACCATAGAGACCTCAAGCCAGAGAATTTGCTGCTAGATGCTTCTGGCCAGCTTAAAGTTTCTGATTTTGGTTTGAGTGCACTATCACAAGAAGTCAAGGATGATGGACTGCTTCATACTACATGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTGATGATAGAGGCTATGATGGAGCAACTGCGGACTTGTGGTCTTGTGGAGTGATTCTCTTTGTATTACTTGCAGGTTACTTGCCTTTCGATGACCCTAATCTTATGAACCTATATAAAAAAATATCTGCTGCCGAATTTACTTGTCCCCCATGGATGTCCTTCAGTGCCAGGAAATTGATAACTCGAATTTTGGATCCTAACCCCATGACACGTATCACTATATCTGAGATCTTGGATGATGAATGGTTTAAGAAAGATTACAAGCCTGCAGTTTTTGAGGAGACAGGGAAGACCAACCTTGATGACATTGAAGCTGTGTTTAGAGATTCTGAAGAGCACCATGTGATGGAAAAGAAGGAAGAACAGCCAACAGCCATTAATGCATTTGAATTAATTTCTATGTCCAAAGGGCTAAACCTTGAGAACTTGTTTGATATAGAGCAGGCTTTGAAAAGAGAAACAAGGTTCACATCAAGATGCCCGGCGAAAGAGATAGTTAACAAGATTGAAGAAGCTGTAAAGCCTCTTGGTTTTGATGTCCAGAAGAAAAACTACAAGATGAGGCTCGAGAATGTGAAAGCAGGAAGGAAGGGAAACCTTAATATTGCCACTGAGATATTTCAAGTGGCACCTTCTCTTCACATGGTTGAGGTGAGGAAAGCAAAAGGTGATACATTGGAGTTTCACAAGTTCTACAAAAATCTTTCAACAAGGCTTGATGATGTTGTTTGGAAAGCTGAGGACACTCAAGAAGCAAAGTAA 1317 0.407 MSQSKIKRRIGKYEVGTTIGEGTFAKVKFARNSETGEAVAIKILEKEKVLKHKMAEQIRREIATMKLIKHPNVVQLYEVMGSRTKIYIVLEFVTGGELFDKIVNNGRMNEKEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDASGQLKVSDFGLSALSQEVKDDGLLHTTCGTPNYVAPEVLDDRGYDGATADLWSCGVILFVLLAGYLPFDDPNLMNLYKKISAAEFTCPPWMSFSARKLITRILDPNPMTRITISEILDDEWFKKDYKPAVFEETGKTNLDDIEAVFRDSEEHHVMEKKEEQPTAINAFELISMSKGLNLENLFDIEQALKRETRFTSRCPAKEIVNKIEEAVKPLGFDVQKKNYKMRLENVKAGRKGNLNIATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTRLDDVVWKAEDTQEAK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3278 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Prci2g3278 438 Gene3D Phosphorylase Kinase; domain 1 2 92 - -
Prci2g3278 438 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 419 - -
Prci2g3278 438 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Prci2g3278 438 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g3278 438 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Prci2g3278 438 FunFam Non-specific serine/threonine protein kinase 6 309 - -
Prci2g3278 438 CDD CIPK_C 312 426 - -
Prci2g3278 438 FunFam Non-specific serine/threonine protein kinase 305 430 - -
Prci2g3278 438 CDD STKc_SnRK3 12 267 - -
Prci2g3278 438 Gene3D Transferase(Phosphotransferase) domain 1 93 296 - -
Prci2g3278 438 SUPERFAMILY Protein kinase-like (PK-like) 9 286 IPR011009 -
Prci2g3278 438 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g3278 438 Pfam NAF domain 308 367 IPR004041 GO:0007165
Prci2g3278 438 Gene3D Kinase associated domain 1, KA1 305 430 - -
Prci2g3278 438 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Prci2g3278 438 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3278 Prci-Chr2 41345738 41352839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3278 3 411 CBL-interacting serine-threonine protein kinases AT2G26980 78.484 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Prci2g3278 Pkinase 6.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3278 - - pcin:129303143 875.159