Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3208 ATGCCATTTTTTCTCCTCCCCCAAATATTCCTTTTGGGATGCTCGTGCGCTCATGCATTTGAAGTCCTCAGTTTTGCATCACTCTCTCTCGTTTCTTGCCCTTGGGGATTTTCTTGGAATTCAATGGAAAAAACACATGCAGATGCAGATGCAGATGCTGGAGTTAGAAGTGATAGAGATTCCTTGTCAGATCCTGCTCATTATCATCGTCTACAGACACGCACGGGAAATGAAAAAGGTGATAATTCCTCCTTGCTTCAGCAGTCCAGACGACCAAGTCTCGCCTCTTTGCATATACCAGTAAGGTCAGTAGAAGGTGCGTTACCATCTTCTGCAAAGACAGATGTTCTATCCCTGTCAAGTCCAGGTTCCTCTCGTGGAGGACTGCCTCCAAGACCAAATTCAGCTAGAGTCAAGTCTTCCATGAGAAGTTTACTTCCTCAGAGGAGTTTAAAGGCAAAAAATTGTTCTCCGGATTGTGAAAGGGAAGTTCTCATTGTTTCTGATATTCCATCGTCAGATGGAACTTTGGATAAGCCTTCAACTTCAAGGTCCCTTTCTTTTAATAAGGTTTTGTTCCCTTCATCAACAAAAACATCAAATTCATTACCAGTTACACCAATTGCAAATACAGTTGCAGAGACTGTACAGGGAAGTCATCTAGGAAGTGATCCTGACTTAAGTAAAATGGAAGTCAAGCATCACATGACTCGGTCATTTTCAGTTCCAGTTAATATCAAAACCTCTAGTTTAAAGCGAACAGGTTCTAGGGGTTTGATCCGAGTAATTTCAGCAAGACCACATCCTGCAGCTGTTAATGACCATTCAATTGATAAAGCTTCAGTGCCAGAGATTGCCATTGAAGATGCTACCGAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTAATGGAGCTGGGGGAAGGTGGGGATACCCTCAAGATGGAGTGCAGTTGTAGAGGAGACCTTGCGCTTGCTCATCAAGAGTGTGCAGTAAAGTGGTTTAGTATAAAAGGAAACAAGACTTGTGATGTTTGCAAGCAGGATGTCCAAAACCTTCCAGTGACTCTGTTGAAAATCCAAAGTCCTCATCCTGCTGCTGGATGGTCATCAAATAGCTCACAGCAGACAGAAGTTTCTTTTCACAGGTTTCAGATATGGGTCCTCGTGCTCTTGCCATCTCACTACCTTTCGCCTGCACATTTGGCCTTGTTGCCTCTTTGCTTGCTTCAACCATGGGGATTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCTTGCTGGCTCATGTATTTTATACTATACGTAA 1323 0.4324 MPFFLLPQIFLLGCSCAHAFEVLSFASLSLVSCPWGFSWNSMEKTHADADADAGVRSDRDSLSDPAHYHRLQTRTGNEKGDNSSLLQQSRRPSLASLHIPVRSVEGALPSSAKTDVLSLSSPGSSRGGLPPRPNSARVKSSMRSLLPQRSLKAKNCSPDCEREVLIVSDIPSSDGTLDKPSTSRSLSFNKVLFPSSTKTSNSLPVTPIANTVAETVQGSHLGSDPDLSKMEVKHHMTRSFSVPVNIKTSSLKRTGSRGLIRVISARPHPAAVNDHSIDKASVPEIAIEDATEDIPEEEAVCRICLMELGEGGDTLKMECSCRGDLALAHQECAVKWFSIKGNKTCDVCKQDVQNLPVTLLKIQSPHPAAGWSSNSSQQTEVSFHRFQIWVLVLLPSHYLSPAHLALLPLCLLQPWGLHVGLCLLPVCNCHLAGSCILYYT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3208 440 SUPERFAMILY RING/U-box 297 352 - -
Prci2g3208 440 CDD RING_CH-C4HC3_MARCH 301 349 - -
Prci2g3208 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 356 IPR013083 -
Prci2g3208 440 ProSiteProfiles Zinc finger RING-CH-type profile. 293 355 IPR011016 GO:0008270
Prci2g3208 440 SMART ringv_2 300 349 IPR011016 GO:0008270
Prci2g3208 440 MobiDBLite consensus disorder prediction 137 151 - -
Prci2g3208 440 MobiDBLite consensus disorder prediction 112 154 - -
Prci2g3208 440 PANTHER OS02G0165000 PROTEIN 74 393 - -
Prci2g3208 440 MobiDBLite consensus disorder prediction 113 128 - -
Prci2g3208 440 Pfam RING-variant domain 301 348 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3208 Prci-Chr2 40519404 40552732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3208 284 355 C3H Transcription Factor Family AT2G37950 45.205 5.83e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3208 - - qsa:O6P43_014398 397.127