LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g3151	ATGATTCGAAGGAATCGACGGCAAGATAGATCTTATGGCCTCGGTGAAGAATCTTCCCCAAGCTCTTCAAGTGCTTCTAGTTCAACTCCGACATGGAAGTTCGATGTTTTCTTGAGTTTTGCAGGAAAAGACGTTCGCTTGAATTTCACAGATCACTTGCATCATGCTTTCAAAAGAAGTGGCATCAGAGCTTTTAGAGATGATGAAGGACTAGATAGAGGAGAAGTTATTAAACAACAACTCCTTCAAGCAATTGAGGATTCTCTTTGCGCGGTTGTTGTTCTCTCTGAAAATTATGCAAATTCTACATGGTGTTTGGATGAACTTCAAGAGATTCTTGAATGTCGAAAAAAATTTGGTCGACAAGTTTTTCCAGTCTTTTATGATGTAGATCCATCTGATGTAAGACATCAAAGAAAAAGTTTTGGAGAAGCTTTAGCCAAACATGGAAAGAGATTCAGAAAAAGCAAAGACAAGGTTGAGAAATGGAGGTATGCCTTATCACAAGTTAGCTACTTGTCAGGCTGGGACTCCAGGGGTCGGCATGAAACAGAAGTTATCCAAAAAGTTGTTGAAGCAGTACGGAACAATTTATGTTCTAAATTGCCATCTTATCATGATAATTTAGTTGGAATTGACTCGAGGATGGTTGAGATAAATTCACTACTAGAGATAGAGGTGGACGATGTTCGTTTTGTAGGGATCTGGGGTATGGGCGGTATTGGCAAGACAACTCTTGCTAGAGTTGTTTTTGAAAGAATCTTTGGCCAATTTGAAATGTTTTGCTTCCTTGCTAATGTCAGGGAAATTTCAGAAAGAAAAGGCCTAGATAGTCTGAAAAGTGAACTGCTTTTACATCTCAGCACAAGGGAAAACATACGTGGGAAGCATTCTTGTATGTTCACTCATCTAGGAAACCATTTTCGGAATAAAAAGCTTCTCCTTGTCCTCGATGATGTAAACCATGCAAGTCAATTAGAGAATTTGGCCGAAAGTCCAAAGTGGTTCGGTGCAGGTAGTAGAGTAATTATAACAACTAGAGATTCGCACTTGTTGAAATCACACGGAGTGCATGGAATATACGAGGTCAAAACCATGGGAAAAGATGAATCTCTTCAACTCTTTTCCAGGAAGGCATTCAAGAAAAATCATCCTGAAGATGATTATTTTGTCTTGTCTAAATTTGTGGTTGAATATACAACAGGTCTTCCTTTAGCACTTAATGTTTTGGGTTCTTTTCTTTGTGGAAGAAGTCTCCTTGAGTGGGAAGAAACTTTAGAGAGGATGAAACAAATTCCAAATGATGATATCTTTCAAATTCTAAAAGTAAGTTATAATGGATTAAATGATGAGGAAAAGACAATATTCTTAGATATTGCTTGTTTCTTCAACGGATGGAAAAGAAATGAAGTAACCCAAATTTTGAAAAGTTGTGATCTTCATCCGACAATTGGAATAAATATTTTGATTGAAAGAGCCCTATTGATTGAAAAGAAAATATTGAATGGAGAAACCATTTTAGAGGTGCATGATTTATTTCAAGAATTAGCTAGGAGTATTGTTTTTCAAGAATCTCCTGGTCAGGTTCATGGACGAAGCAGGTTGTGGAACCTAGAAGACGTCAGTGAAGTGTTGAAAAATGATGAGGGATCTGGAGCAATACAAGCTATTGCTTTGCCTTATAACCTAGATGGAGAAATAGAAGTACATCAGGAAGCCTTCTCAAAGATGTGTAATCTCAGGTTACTCATCATATCAAGTGAATTGAAATTTCCCCGTGGTCTAAAATGCTTTTCTAGTGCATTAAAGGTCATTCGATGGAGGTCATATCCTCTAGAAACTCTTCCAATTGGAAATCAGATGGACAAACTTGTTGACATTCAAATACCTTTTAGTAAAATAAAACTTTGGAATGGCATGCAGCTTATGAAGACGTTGAAGTTTATTGATCTAAGCAATTCCAAAGATTTGGTTGAAACCCCAGATTTCTCAGAAATTCCAATTTAG	2007	0.3717	MIRRNRRQDRSYGLGEESSPSSSSASSSTPTWKFDVFLSFAGKDVRLNFTDHLHHAFKRSGIRAFRDDEGLDRGEVIKQQLLQAIEDSLCAVVVLSENYANSTWCLDELQEILECRKKFGRQVFPVFYDVDPSDVRHQRKSFGEALAKHGKRFRKSKDKVEKWRYALSQVSYLSGWDSRGRHETEVIQKVVEAVRNNLCSKLPSYHDNLVGIDSRMVEINSLLEIEVDDVRFVGIWGMGGIGKTTLARVVFERIFGQFEMFCFLANVREISERKGLDSLKSELLLHLSTRENIRGKHSCMFTHLGNHFRNKKLLLVLDDVNHASQLENLAESPKWFGAGSRVIITTRDSHLLKSHGVHGIYEVKTMGKDESLQLFSRKAFKKNHPEDDYFVLSKFVVEYTTGLPLALNVLGSFLCGRSLLEWEETLERMKQIPNDDIFQILKVSYNGLNDEEKTIFLDIACFFNGWKRNEVTQILKSCDLHPTIGINILIERALLIEKKILNGETILEVHDLFQELARSIVFQESPGQVHGRSRLWNLEDVSEVLKNDEGSGAIQAIALPYNLDGEIEVHQEAFSKMCNLRLLIISSELKFPRGLKCFSSALKVIRWRSYPLETLPIGNQMDKLVDIQIPFSKIKLWNGMQLMKTLKFIDLSNSKDLVETPDFSEIPI	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g3151	668	Gene3D	-	366	449	IPR042197	-
	Prci2g3151	668	PRINTS	Disease resistance protein signature	641	657	-	-
	Prci2g3151	668	PRINTS	Disease resistance protein signature	307	321	-	-
	Prci2g3151	668	PRINTS	Disease resistance protein signature	400	414	-	-
	Prci2g3151	668	PRINTS	Disease resistance protein signature	232	247	-	-
	Prci2g3151	668	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	195	459	IPR027417	-
	Prci2g3151	668	ProSiteProfiles	TIR domain profile.	32	198	IPR000157	GO:0007165
	Prci2g3151	668	SUPERFAMILY	Toll/Interleukin receptor TIR domain	23	176	IPR035897	-
	Prci2g3151	668	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	35	667	IPR044974	GO:0006952
	Prci2g3151	668	MobiDBLite	consensus disorder prediction	14	30	-	-
	Prci2g3151	668	SUPERFAMILY	"Winged helix" DNA-binding domain	436	546	IPR036390	-
	Prci2g3151	668	Pfam	TIR domain	33	211	IPR000157	GO:0007165
	Prci2g3151	668	SUPERFAMILY	L domain-like	564	665	-	-
	Prci2g3151	668	FunFam	Disease resistance protein (TIR-NBS-LRR class)	30	200	-	-
	Prci2g3151	668	Gene3D	-	198	359	IPR027417	-
	Prci2g3151	668	Pfam	NB-ARC domain	221	431	IPR002182	GO:0043531
	Prci2g3151	668	Gene3D	-	26	197	IPR035897	-
	Prci2g3151	668	MobiDBLite	consensus disorder prediction	1	30	-	-
	Prci2g3151	668	SMART	till_3	33	173	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g3151	Prci-Chr2	39888436	39892953	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g3151	34	664	WRKY Transcription Factor Family	AT4G12020	30.200	4.02e-78	270

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g3151	-		-	pcin:129301634	1320.45