Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3112 ATGGAGTTCGTCGGCAAAACTGTTAAGAAGGAGATCAAGGGGGTTGGGATTATCTTGGGAACAGTGAAATCTTTCGATTCATCGTCTGGGTTCGTGGAGATCGTTTACGAAGATGGTAACTCTGAGGAGCTTGAATCGTCTGACGTAGCTTCTCTTGTTCAAGGTGAAACGGAGTTAGTAAGGGTGAAGCGCCGGGGAAGGAAGCCCAAGAAGAGGCGTCGTGTCGAAAGGAAGCATGACACCTGTGGAAGCCCAGGTAATATTGGTGAGAATTTGGGTGTTTCCATGCTAAATAATTCCGAATTTAGGGGGGTTTCGGATGAAGATGTTTCTGCTAGAAGGAATTTAAAAGTAAATGGTGAATTAGATAATGGGGCCGGAGGGAATTTGACTTTGGGAACTGAAGTCATGGGCAATTTGAATTGGAGTGCCAGCTCTAACGGGATCAAAGAAAATCAACGGATGGAAAGCGGTTATGAAGAGAAATCCAAAGATAGTATATCCACTAATGGTAATTCCAGCATAACGGATTGTGCAAAAGATGGGTTTGATTTGAATGCTAGACTTAACCTGAACGAGGCCTTGGATCTGAATAATGGGTGTAGTTCGCATGTTAATACTGAGGATGGTTTGAACAAAAGGGGTTGCATTGATTTAAATGTGGATGTAAATCATGAAATTGATTCCAGCCCCAAGACGACTGATTTAGGTTGTCCAGCAGCTGAAATATCTAAGCGGGAATGTAATTTTGATTTGAATGTGGAGGTATGTGATGAAGTTAAGGAGACTCTGGGTGACACCGCTGGAGACGGATTCTCAGATGGAGGTGGTTTGTTTGGTAAAATGGGGGAAAGCCAAAAGTCAGAGACAGATATTAGTCAAAATTTTGTACAAGATGACAGTGTTAAAAGGAGTTTGGATGATATCACAAATTCAATCAAATTGGAGGGAATTGATAGTTTCCAAGAGTGTGCAGGTAAAGACACTTCTGTGAGTTTGATTGAGGAAAAGGAAGAAGGATTTTGCAATGGAGATACTGTGGCTCTTAACTCTGTTGTGGTTTCAAATGCTATTTCTGTCAAGGGTTGTGGTTCTGTGGATGTTTATCGGGATCATAGTCCTTCTGAAACTGGTATTGCCATAACTCATGAATGTCAAAATGAGCCAGGAAGCCAATACAAACAAGGAAGTGGCCGCAGGAAGAGAAGAAAACTATCGGATAATCTGAAAGCCACTCCAGAGACAGTTTTAAGGAGGAGCTCTCGCCGTGCATCAGCTCGAAAACGAGATTCAAGCCCTATAACATTGAATGTAATGGATGATCCTTTGATGTCTCCAGGACCCAGTGCCATAACAGAAGAAAAAACGATTCTTTCTGGCTCTGAGCAGTGTGAACAGTGTAGTGAACTATCACCAAAGCTGCAACTACCCCCATCTTCTCAAAATTTGAACTTAGATAGCATTCCTGGTCTTGATCTTTTTTCCATTTATGCTTGTTTGAGGTCTTTCAGTACCATACTATTTTTAAGTCCTTTTGAGTTGGAGGATTTTGTAACTGCACTGAAGAGTGTAAATCCTAATATATTATTTGACAACATTCATGTTGCTATTTTACAAACTCTTAGAAAGCACTTGGAATACCTTTCAAATGAAGGTTGCCAATCTGCATCCGATTGCCTGAGAAATTTGAACTGGGATTTGTTGGACGTGGTCACATGGCCCATTTATATGGCTGCGTATTTTCTGATTCATGGTTCTGGACTTGAAACTGGTTTTAATCTCAAGTATTTGATGTTTGGAAGTGACTACTACAAGCAGCCTGTAACTTTGAAGATTGAAATTCTTCAGTGCCTTTGTGATGATATGATGGAAGTGGAAGCTATAAGGTTGGAGCTTAACAGAAGATGTTTGGTGATTGAGGCTGATATGAGTTTTGATCAAAGTATGTATCTTGACATTTGCAAGAGAAGAAGAGATCTGAGGGACTTGTCTGGTGGCTTTTCTCTGTCCGAGGAGATTGTTGATGTCACAACTGACTGGAACAGTGACGAATGCTGCCTTTGCAAGATGGATGGAAGTTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCACTCCAAGTGTGTAGGGGTTGCAAGTGAACATTTACCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTAGCAGACGTAAGCCTTGGATGAAACCTCAAAAATCACTTCGAGGAGCAACCCTTTTAGGAATTGATCCACATGGTCGCCTTTTTTTTGAGAGCTGTGGTTACCTGTTAGTGTCAGATTCATCTGACATGAGATCCTCGTTCAATTACTATCACATAAATGATCTGCATGTTGTAATTGAAGTGCTAAAAGCGGCTGATGCTTTCTATGGTAGCATATTAATGGCCATCTGCAAGCACTGGGATATTCCTTTTAACTTAAATGGAGCAACTTGTCACCTGGAACTCTCAAATCAAAATGCTAGCAGGAACATGCATGTGAAGGCAGAATATTCTGCTCTATATCCATCTTCAGCTCCTTTTTCATCCTCAGAAGCATTCTTGGACAAGAATAAGGTTGCTGATCAAAGAAAGTGTGAAAAAGCTTCTACCGTACAACCTGTTGGCCAAGAGTTTCTCAAAGCTGAGAGACAGTTAGATTCAGTGATAATGACAGAAAGTCCCTGTGTTGCTTCAGAAATGTCATCGGATACCACACAAATGAGGTCAATCATTGGTGATCCTCTAATGCATGGACTCAATGATTCCAATAGATCTGACGAGGTCTTGAATCAGCCAGGAATACCAGAGAAAGTGCACAGAGTCAGTCACTCTTTGAGGTCTTCCCGCTTAGATGTGAGCCATAAGACAAACTTAACATCAACTATGTCCACTGGGAATAGATCTACTTTGGATATGCCTTGTGGAATTGACTATGTAAACTATTACAGCTTTGCTCGAACAGCCTCATTAGTGGCGGAGGAGTTGATACGTAAATCATCTGAAAAGATCAACAAGCATATTGAAATATCTGAAGAAGACTTTATTTCAGAACAAGCGAAGGCTATTATTAAGAAATCTACAAACTTCTGCTGGCCAGGTTCTCAAAATGTAAATGCAGCTGCTCAAAAGGAAAAATGTGGGTGGTGCTTTACGTGCAAAGTTGAAAATGATGACAGAGATTGCTTGTTTAACTCTGTGGTGATGCCTGTTTGGGAAGTGTCTAAAAGTGATTTAGTTGGGTTTGAACCAAAGAACCAGAATGCTCATCTTAGAGATGTCATATTTTATGTTCTCTCCCTTGAGGATCGATTACGTGGGCTTCTATTGGGGCCTTGGTTGAGCATCCATCATTCTAATAATTGGCGTAACAATCTTCTTAAGGCATCTGATGTTGCATCTGTTAAATTCTCATTACTGACTCTAGAGTCCAATTTGCGGCCTCTTGCTCTTTCGGCAGACTGGTGGAAACATGTGGATTCTGTTGTTACCATTGGTTCAGCTTGTCATATTGCAGCCAGTTCACGCACATCTTCAAGGCATATTATTGGAAGGAAAAGGGCTAAGTTCTCCGATATTGAGTCCAGTGCATCTTCTAATACAAGTGGTTTGGGAACATATTGGTGGAGAGGTGGTCGGCTTTCCCGTCATTTGTTTAATTGGAAGATTTTGCCGCACTCTTTGCTTACCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACTGGGTATTCTATATCCTGAGAATTCTGATTTTTCAAAGAGAAGTAAATGTGTTGCTTGGAGAGCCGCTGTGGAGACATCAATTAGTGTGGAGCAACTTGCTATTCAGGTTAGAGAGCTTGATTCAAACATTAAGTGGCATGACATTGAGAATACTCATCCTCTGTGTGTGATGGACAAGGAATTTAGAAAATCAATCAGGTTGTTCAAAAAAGTAATTGTACGCAGGAAAAGCACTGAAAGGGAATCTGCAAAATATCTTCTTGATTTTGGGAAGAGAAGGGCTGTGCCAGATATTGTTAAGAAACATGGTTCTTTGTTGGAAGAATCAAGTGACAGGAAAAAGTATTGGCTGGAAGAACCTTATGTTCCCCTGCATCTTATAAAGAATTTTGAGGACAAAAGAATCACTCGGAAGTCCAATGAAATGAAACCAGGAAAAGTTCTGGAGATTGGTGGATTTAATGAGAGAGCTACCCAAAAACGGGGTTTTTCATATTTGTTTTCTAGGATGGAAAGGCCTAACTATCATCAGTGTGGCCACTGCAACAAAGATGTTCCAACCAGGGAAGCTGTGAGCTGCCAGTACTGTAATGGATTCTTCCATAAGAGGCACGCCAGAAAATCTGGTGGCACTGCTGAATTCACATATTCATGTCACAGATGCCTAGATGGGATGTGTGTAAATTCTAATTCTAAAAGAAGAAAACTTGACCCAAAGCTAGGGAATATTCAATCACAAAAAGGTCGAAAGGCCCCCTCAGTGGGTAGACCAGTTAAGCAAAAGGGCAGTAAAAAGCCATTGAGTAAGAGGCGGCAAGGAAAATCTCAAACCAATAAAAAGTTGCCACCAAGCGTACCTCTTCGTCGTTCAGCCAGGAAGACCAAATGCTTGTATGTGCAAAATAAAAGGAATGTAGGACGTAAAAAAGGAAAAAGAAGCAAATCCAAGAAGGTGACATCTAGGAAGGTCAAGGAAACTACTTCTCGTTCCAAGACGGCGGTAACTTTTGAGCGAAAGAAAAGAACTCATGTCTGTAACAGTTACTGGCTTAATGGTCTTAGGTTGTCCACAAAGCCAAATGATGAACGAGTACTTCTGTTTAAGGAGAAGAAGCATCTTGCCCCCTCAAAAGGTTTTTCTAACGCCTTTGATCAACCTAAATGCCATCTTTGTTGTGGAGATGGATGCACTTTGAGTTATATTGCTTGTGAAATCTGCGGAGAGTGGTTTCATGGAGATGCTTTTGGACTCACTGTAGAGAATGTTAGACAACTTATTGGATTTAGGTGTCATGTATGTCGTGATAGGACTGCACCAATCTGTCCCTACAAGAATAGTAATGCCCTGACTCATGCTGAAATCAAAACTGCAACTGAGTGTGCAGAGGAACTACCTAATTCCGTTTAA 5133 0.4115 MEFVGKTVKKEIKGVGIILGTVKSFDSSSGFVEIVYEDGNSEELESSDVASLVQGETELVRVKRRGRKPKKRRRVERKHDTCGSPGNIGENLGVSMLNNSEFRGVSDEDVSARRNLKVNGELDNGAGGNLTLGTEVMGNLNWSASSNGIKENQRMESGYEEKSKDSISTNGNSSITDCAKDGFDLNARLNLNEALDLNNGCSSHVNTEDGLNKRGCIDLNVDVNHEIDSSPKTTDLGCPAAEISKRECNFDLNVEVCDEVKETLGDTAGDGFSDGGGLFGKMGESQKSETDISQNFVQDDSVKRSLDDITNSIKLEGIDSFQECAGKDTSVSLIEEKEEGFCNGDTVALNSVVVSNAISVKGCGSVDVYRDHSPSETGIAITHECQNEPGSQYKQGSGRRKRRKLSDNLKATPETVLRRSSRRASARKRDSSPITLNVMDDPLMSPGPSAITEEKTILSGSEQCEQCSELSPKLQLPPSSQNLNLDSIPGLDLFSIYACLRSFSTILFLSPFELEDFVTALKSVNPNILFDNIHVAILQTLRKHLEYLSNEGCQSASDCLRNLNWDLLDVVTWPIYMAAYFLIHGSGLETGFNLKYLMFGSDYYKQPVTLKIEILQCLCDDMMEVEAIRLELNRRCLVIEADMSFDQSMYLDICKRRRDLRDLSGGFSLSEEIVDVTTDWNSDECCLCKMDGSLICCDGCPAAFHSKCVGVASEHLPEGDWYCPECAISRRKPWMKPQKSLRGATLLGIDPHGRLFFESCGYLLVSDSSDMRSSFNYYHINDLHVVIEVLKAADAFYGSILMAICKHWDIPFNLNGATCHLELSNQNASRNMHVKAEYSALYPSSAPFSSSEAFLDKNKVADQRKCEKASTVQPVGQEFLKAERQLDSVIMTESPCVASEMSSDTTQMRSIIGDPLMHGLNDSNRSDEVLNQPGIPEKVHRVSHSLRSSRLDVSHKTNLTSTMSTGNRSTLDMPCGIDYVNYYSFARTASLVAEELIRKSSEKINKHIEISEEDFISEQAKAIIKKSTNFCWPGSQNVNAAAQKEKCGWCFTCKVENDDRDCLFNSVVMPVWEVSKSDLVGFEPKNQNAHLRDVIFYVLSLEDRLRGLLLGPWLSIHHSNNWRNNLLKASDVASVKFSLLTLESNLRPLALSADWWKHVDSVVTIGSACHIAASSRTSSRHIIGRKRAKFSDIESSASSNTSGLGTYWWRGGRLSRHLFNWKILPHSLLTKAARQAGCTKILGILYPENSDFSKRSKCVAWRAAVETSISVEQLAIQVRELDSNIKWHDIENTHPLCVMDKEFRKSIRLFKKVIVRRKSTERESAKYLLDFGKRRAVPDIVKKHGSLLEESSDRKKYWLEEPYVPLHLIKNFEDKRITRKSNEMKPGKVLEIGGFNERATQKRGFSYLFSRMERPNYHQCGHCNKDVPTREAVSCQYCNGFFHKRHARKSGGTAEFTYSCHRCLDGMCVNSNSKRRKLDPKLGNIQSQKGRKAPSVGRPVKQKGSKKPLSKRRQGKSQTNKKLPPSVPLRRSARKTKCLYVQNKRNVGRKKGKRSKSKKVTSRKVKETTSRSKTAVTFERKKRTHVCNSYWLNGLRLSTKPNDERVLLFKEKKHLAPSKGFSNAFDQPKCHLCCGDGCTLSYIACEICGEWFHGDAFGLTVENVRQLIGFRCHVCRDRTAPICPYKNSNALTHAEIKTATECAEELPNSV 1710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3112 1710 SMART PHD_3 1419 1464 IPR001965 -
Prci2g3112 1710 SMART PHD_3 684 727 IPR001965 -
Prci2g3112 1710 SMART PHD_3 1629 1676 IPR001965 -
Prci2g3112 1710 ProSiteProfiles Zinc finger PHD-type profile. 682 729 IPR019787 -
Prci2g3112 1710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1624 1682 IPR013083 -
Prci2g3112 1710 MobiDBLite consensus disorder prediction 1474 1574 - -
Prci2g3112 1710 MobiDBLite consensus disorder prediction 388 446 - -
Prci2g3112 1710 Pfam DDT domain 492 543 IPR018501 -
Prci2g3112 1710 ProSiteProfiles DDT domain profile. 487 547 IPR018501 -
Prci2g3112 1710 SUPERFAMILY FYVE/PHD zinc finger 659 730 IPR011011 -
Prci2g3112 1710 PANTHER PHD FINGER FAMILY PROTEIN 2 1681 - -
Prci2g3112 1710 CDD PHD1_AIRE 684 726 - -
Prci2g3112 1710 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 603 632 IPR028942 -
Prci2g3112 1710 MobiDBLite consensus disorder prediction 1544 1561 - -
Prci2g3112 1710 ProSitePatterns Zinc finger PHD-type signature. 685 726 IPR019786 -
Prci2g3112 1710 SUPERFAMILY FYVE/PHD zinc finger 1627 1682 IPR011011 -
Prci2g3112 1710 MobiDBLite consensus disorder prediction 64 90 - -
Prci2g3112 1710 SMART testlast3 487 547 IPR018501 -
Prci2g3112 1710 Pfam PHD-finger 685 727 IPR019787 -
Prci2g3112 1710 MobiDBLite consensus disorder prediction 1504 1518 - -
Prci2g3112 1710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 744 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3112 Prci-Chr2 39200670 39221927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3112 1 1688 PHD Transcription Factor Family AT5G12400 40.357 0.0 1110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Prci2g3112 DDT 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3112 - - gmx:100800973 1971.82