Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3090 ATGAGTTCCTTCTCCATTACACGGAAAAAAACACCATTCCAAAAGCACAGGGAAGAAGAAGAGGCAAAGAAGAAGAGAGCAGAAGATGAAACCGCACGTTTATATGCTGAGTTTGTTGAGTCATTTCAAGGTGATAGCACTCCTGGATCAAAGGCTTTCGTTCGAGGAGGAACAATTAATCCCAATGAAAAAGTAAAAGCAGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGGTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCCCCTCCTTTGGCAACCAAGGGAAAAGACTCTGATAAGAAAAAAGAGGAGGAGAAGCCTAAGGAGAAGGAGAAAGGTAAGTCACGGAACATAGATAATTTTATGGAGGAGTTAAAACATGAGCAAGAAATGAGGGAGAGGCGAAATCAAGAACGTGAACATTGGCGTGATGGGCGCAGCACAGAACATTCTTCTATTAGTCGCTTTGATGAACTGCCTGATGACTTTGATCCAAGTGGAAAACTGCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTATACGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTCCTCCGAACTTTCGGAAGATTTGGACCCATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTTGTGGTCTATGAGTATGAATTGAAAATTGGGTGGGGCAAGTCTGTTGCCCTCCCATCACAAGCACTGCCGGCACCCCCACCAGGACATATGGCCATTAGGAGTAAGGAGGGTGCAACTGTGATCTTGTCTGGTCCATCTGGTCCTTCAGGTCCTCCAGTAACTTCTGTGCCCAATCAGAACTCTGAACTGGTTCTTACCCCTAATGTTCCTGACATAATGGTGACGCCTCCTGAAGATGAGCATTTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGATGGAGGATGTGCTTTTGAACAAGCCATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAACATACTTACTATGTTTGGAGACTATACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGGACAGAACCCTTCATTATGATAACTGGTAGTGGAAGATGGATTCCTCCATCATTGCCCTCTGCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCAGCCGGAAGAAGCAGGCGTGTGGAACCTGAAAGAACACTAACAGATGCACAAAGGGATGAATTTGAGGATATGTTGCGTGCTTTAACATTAGAAAGGAGTCAAATAAAAGAAGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTCTTAACAGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAGTTGCAAGGCTTATGCTCGTCTCTGATGTTCTTCATAACAGTAGTGCTCCAGTAAGAAATGCTTCTGCATATCGCACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAACAGGACGTATTACTGCTGAGGCCCTAAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCAGATTGGTTTCTTTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACATTTATTCGATCTGGGAATTCTGGTGTTACACTCTTTCATTCCATCTGTGGTGATGCACCTGAAATTGAGAAAAATATACATTCTGAAGATACAGTTGATGGCAGCAAGAGCAACCAAGATTCTGCATTGGCAATGGGCCGAGGAGCTGCAATGAAGGAGCTAATGTCTCTTCCTCTTGCTGAGCTGGAAAGACGATGTCGACACAATGGATTGTCACTTGTGGGCGGTAGGGAAATGATGGTTGCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAGTTAGATGATGAATTGAAATATGCTCAGAACCAACCAAGTTCTGGGAGATATTCAAGTAATCGGAGAGAAACAAGCATTGAGCCTGAACCAGTGGGTTTCTCTGAATGGGATCATTATGGGGAAGATGATTTACCCTCACAAGCCAAAGGCTTAGTATCTGTCGCACAAACTTTGCCCATTCCACACCCTGAATTGAAAGCCTTCGCAAGGAAAGAAAGGAATGATCCAGTTTTGCCAGCCTCTAAATGGGCTCGAGAGGATGATGATAGTGATGATGAACAAAAGGGTCATGGGAAGGGTTTGGGATTAAGCTATTCATCTTCTGGTAGTGAGAATGCTGGTGATGGTACTATTAAGGCAGATGAGCTGGAGTCTGCTGCTGATACAAGCATTTCCGTGCCAGCTGATGGTGGAATGAATGAAGAATTGAGGCAGAAGTTGAGACGGCTAGAAGTTGCTTTAATTGAATACCGGGAGTCTCTTGAAGAGAGGGGAATAAAAAATTTAGAGGAAATTGAGAGAAAAGTCTCACTGCACAGGAAACGGCTGCAAGCAGAGTTTGGATTATCAGATTCTGGAGAAGATGGTCAAGGAAGTAGAAGAACATCTTCGGAGAGGAGGGACAGGCGAGATGATTCACATGATGTCTCAAGAAAACGCCACCGTAGCCATAGTCGAAGTCATAGTCCACAGCGAAGATCATCTGGCAGAGACAGGGAGAGGGAACATGATGCAGACAGGGACCGAGATAGACAGAGAGACAGAGGAAGTTACGATTTTGATAGCGATAGAGGTAGGGACCGAGAGAAAAGTGGAAGCAGGGAGAGGGATGATCATGAAAGGGAGAGAGGCAGAGATAGGGACCGGAGGAGACGGGTGAAATAA 2934 0.4448 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTINPNEKVKADSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKDSDKKKEEEKPKEKEKGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRSTEHSSISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSAKSPEHEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFIRSGNSGVTLFHSICGDAPEIEKNIHSEDTVDGSKSNQDSALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQPSSGRYSSNRRETSIEPEPVGFSEWDHYGEDDLPSQAKGLVSVAQTLPIPHPELKAFARKERNDPVLPASKWAREDDDSDDEQKGHGKGLGLSYSSSGSENAGDGTIKADELESAADTSISVPADGGMNEELRQKLRRLEVALIEYRESLEERGIKNLEEIERKVSLHRKRLQAEFGLSDSGEDGQGSRRTSSERRDRRDDSHDVSRKRHRSHSRSHSPQRRSSGRDREREHDADRDRDRQRDRGSYDFDSDRGRDREKSGSRERDDHERERGRDRDRRRRVK 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3090 977 Gene3D - 97 269 IPR012677 -
Prci2g3090 977 Coils Coil 849 869 - -
Prci2g3090 977 SMART 558neu5 453 588 IPR006569 -
Prci2g3090 977 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Prci2g3090 977 Gene3D - 822 873 - -
Prci2g3090 977 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Prci2g3090 977 MobiDBLite consensus disorder prediction 1 182 - -
Prci2g3090 977 PANTHER RNA PROCESSING PROTEIN LD23810P 1 910 - -
Prci2g3090 977 MobiDBLite consensus disorder prediction 11 35 - -
Prci2g3090 977 CDD RRM_SR140 185 268 IPR035009 -
Prci2g3090 977 MobiDBLite consensus disorder prediction 690 708 - -
Prci2g3090 977 Gene3D Surp module 324 393 IPR035967 GO:0003723|GO:0006396
Prci2g3090 977 ProSiteProfiles SURP motif repeat profile. 338 381 IPR000061 GO:0003723|GO:0006396
Prci2g3090 977 MobiDBLite consensus disorder prediction 867 977 - -
Prci2g3090 977 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Prci2g3090 977 MobiDBLite consensus disorder prediction 881 901 - -
Prci2g3090 977 SMART cwf21_2 822 871 IPR013170 -
Prci2g3090 977 Coils Coil 451 471 - -
Prci2g3090 977 MobiDBLite consensus disorder prediction 684 727 - -
Prci2g3090 977 Gene3D - 446 593 IPR008942 -
Prci2g3090 977 SMART surpneu2 336 390 IPR000061 GO:0003723|GO:0006396
Prci2g3090 977 MobiDBLite consensus disorder prediction 748 781 - -
Prci2g3090 977 MobiDBLite consensus disorder prediction 413 445 - -
Prci2g3090 977 Pfam CID domain 453 581 IPR006569 -
Prci2g3090 977 Coils Coil 17 37 - -
Prci2g3090 977 MobiDBLite consensus disorder prediction 748 825 - -
Prci2g3090 977 Pfam Surp module 336 388 IPR000061 GO:0003723|GO:0006396
Prci2g3090 977 SMART rrm1_1 187 263 IPR000504 GO:0003723
Prci2g3090 977 SUPERFAMILY Surp module (SWAP domain) 312 393 IPR035967 GO:0003723|GO:0006396
Prci2g3090 977 MobiDBLite consensus disorder prediction 914 970 - -
Prci2g3090 977 CDD cwf21_RRC1-like 822 871 IPR047491 -
Prci2g3090 977 Coils Coil 823 843 - -
Prci2g3090 977 ProSiteProfiles CID domain profile. 446 591 IPR006569 -
Prci2g3090 977 MobiDBLite consensus disorder prediction 65 80 - -
Prci2g3090 977 Coils Coil 123 143 - -
Prci2g3090 977 SUPERFAMILY ENTH/VHS domain 450 590 IPR008942 -
Prci2g3090 977 MobiDBLite consensus disorder prediction 99 169 - -
Prci2g3090 977 ProSiteProfiles SAP motif profile. 640 674 IPR003034 -
Prci2g3090 977 MobiDBLite consensus disorder prediction 420 445 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3090 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.51e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3090 K12842 - gmx:100776093 1542.71