Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3055 ATGATGAAGTGGGAAATGGATATTCTCTCATCTCCTCACATCTCCAACCCCACATGGCTCATTCAAGATGCCATGAACACAACCAAATGGACTGCTTCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAAGACACACCAGATCGGTGGGTCAAAGTTGCTGCAATGATACCTGGAAAGACCGTAGGAGATGTGATTAAGCAGTACAGAGAATTAGAAGAAGATGTTTGTAATATAGAAGCTGGATTGATCCCAATCCCAGGCTATCATAGTAGTGGCACCACAACCTCGCAATTCACCTTAGATTGGGTTAACACTTCTGGATTTGATGCCTTCAAATCTCATCATGGTGGCAAGAGATCCTCATCAGGTAGACCCCCTGAACAAGAAAGAAAGAAAGGTGTCCCGTGGACAGAAGAAGAACACAAACTGTTCCTTCTGGGTTTGAAGAAGTATGGGAAAGGAGATTGGAGGAACATATCGCGCAATTTCGTGGTGACTCGGACACCGACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGGAAAGACAAGAGAAGAGCAAGCATTCATGATATCACAACTGTGAATCTGTCAGAAACCACAAGAACACCATCTTCTTCTTCCTCTTTAGAAGACAACAATAACAGCAGCAGAAACAGCAGCAACAACAACAATGGATGTAACATAAAGCAGGAGTCAAATCCAAGTGCTACTACTTTAGGTCAAGCGCATTTTCAATGGAACCAGGCAAATGCAGGAGGAGGAATTATGGGGTTTAATCCTTATGGGGTTAACTCGTATGGGATAAGAGATCAGGGCCAGAATCTGCATAGAAGTGCGCTTCTTAATAATCATGACTCTTCTAATTACTTTGGACCTCAAACTCAGAACATGGTCTTCCAAATGCATTCTTCTTCTCCTCACCACTTTTCTCATGCTTGA 972 0.4321 MMKWEMDILSSPHISNPTWLIQDAMNTTKWTASENKLFENALAVYDKDTPDRWVKVAAMIPGKTVGDVIKQYRELEEDVCNIEAGLIPIPGYHSSGTTTSQFTLDWVNTSGFDAFKSHHGGKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTRTPSSSSSLEDNNNSSRNSSNNNNGCNIKQESNPSATTLGQAHFQWNQANAGGGIMGFNPYGVNSYGIRDQGQNLHRSALLNNHDSSNYFGPQTQNMVFQMHSSSPHHFSHA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3055 323 Gene3D - 24 89 - -
Prci2g3055 323 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Prci2g3055 323 NCBIfam myb-like DNA-binding domain, SHAQKYF class 135 187 IPR006447 GO:0003677
Prci2g3055 323 FunFam Transcription factor SRM1 22 89 - -
Prci2g3055 323 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Prci2g3055 323 MobiDBLite consensus disorder prediction 195 247 - -
Prci2g3055 323 Gene3D - 138 188 - -
Prci2g3055 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Prci2g3055 323 MobiDBLite consensus disorder prediction 201 247 - -
Prci2g3055 323 CDD SANT 29 75 IPR001005 -
Prci2g3055 323 SMART sant 26 78 IPR001005 -
Prci2g3055 323 SMART sant 136 186 IPR001005 -
Prci2g3055 323 CDD SANT 139 184 IPR001005 -
Prci2g3055 323 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 247 IPR043363 -
Prci2g3055 323 MobiDBLite consensus disorder prediction 117 139 - -
Prci2g3055 323 FunFam transcription factor MYB1R1 138 189 - -
Prci2g3055 323 SUPERFAMILY Homeodomain-like 28 83 IPR009057 -
Prci2g3055 323 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Prci2g3055 323 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3055 Prci-Chr2 38373833 38375852 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g3055 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3055 - - gmx:100784163 394.045