Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3024 ATGAATCCGTTAACCCTAGTGAAGCGCATTCAGAATATCAATTCCAAAGAAGCTTCTCTGGGAATCAGCGAGGAAGCTTCGTGGCACGCCAAATACAAAGATTCCGCTTATGTATTTGTGGGTGGCATTCCCTTCGATCTGACTGAGGGTGATCTCCTCGCAGTTTTTGCTCAATATGGGGAGGTTGTTGATGTTAATCTTGTTAGGGACAAAGGCACTGGGAAATCAAAAGGTTTTGCATTTCTTGCATATGAAGATCAAAGAAGCACAAATCTTGCTGTAGATAATCTGAATGGAGCACAGATTTTGGGTAGAATCATAAGGGTTGATCATGTTACTAAATATAAAAAGAATGAAGAGGAAGATGAAGAGACAGAGAGGCAGAAAAGGGAGGAACGTGGTGTTTGCAGAGCTTTCCAAAAAGGTGAATGTACTCGTGGAGCTAGCTGCAAATTTTCTCATGATGAGCAAAGAGCTGCTAACACAGGTTGGGGGGCCCCCGAGGATGCTGGTTCAAAGTGGGGTCATGACAAATTTGATGGTCACAAAAAAGAAAAGAAATATGGCAACAGTCAATCGAATCATATTCCAGAAACCAGAGATAGAAATTTACATTCCAGGGCCCTGGGCAATGAGATAGGATTAGGCAACAACCCAAAGCAAAGTGATAAGAGAGAGAAGATATTGCATAGGTATGATGATGATAAATTTGAGGGAAAAGAACATGATCATAGAAGAGAGAAGAGATCAAGAAGGCATGAAGATGATGAATTTGTGTCTAGGTCAGGAGAAGATCGTGATAGAAGGGTTGATAAACAATTGAGAAGGAGAAGTGATGGTGATATGGAACCCGAGCGAAGGGATCATTGTAGGAGGGAAGACACCAGATCAAGGAAGCCAGATGATGATGAATTTGAACCCAAGACTAGGGATTCTGATAGAAGGGAAGAAAAGAGGTACAGGAGACAGGATGATGATTTTGGTAGTAGGTCAAGGGAAGATCATGTTAGCAGGGAAGAAAGAAGGTCAAGGCAGCCCAGAGAATATGATTCTGCATCAAGGTCAAGAGAAGATTATGATAGGAAGCAAGGGGACAGATCAAACAGAAATGATACGGGAAGATCAGAGCCAAAAGTAAAATATGATCCCGACGGGAGAGAAGAAAAGAGATCAAGAAGGTAA 1182 0.4196 MNPLTLVKRIQNINSKEASLGISEEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHVTKYKKNEEEDEETERQKREERGVCRAFQKGECTRGASCKFSHDEQRAANTGWGAPEDAGSKWGHDKFDGHKKEKKYGNSQSNHIPETRDRNLHSRALGNEIGLGNNPKQSDKREKILHRYDDDKFEGKEHDHRREKRSRRHEDDEFVSRSGEDRDRRVDKQLRRRSDGDMEPERRDHCRREDTRSRKPDDDEFEPKTRDSDRREEKRYRRQDDDFGSRSREDHVSREERRSRQPREYDSASRSREDYDRKQGDRSNRNDTGRSEPKVKYDPDGREEKRSRR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3024 393 Gene3D - 8 126 IPR012677 -
Prci2g3024 393 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Prci2g3024 393 CDD RRM_ist3_like 27 115 IPR045844 GO:0000398|GO:0003723
Prci2g3024 393 MobiDBLite consensus disorder prediction 161 393 - -
Prci2g3024 393 Pfam CCCH-type zinc finger 135 155 IPR041367 -
Prci2g3024 393 MobiDBLite consensus disorder prediction 171 191 - -
Prci2g3024 393 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Prci2g3024 393 SMART rrm1_1 37 110 IPR000504 GO:0003723
Prci2g3024 393 Gene3D - 127 206 - -
Prci2g3024 393 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Prci2g3024 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Prci2g3024 393 FunFam Uncharacterized protein 127 205 - -
Prci2g3024 393 MobiDBLite consensus disorder prediction 219 393 - -
Prci2g3024 393 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Prci2g3024 393 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Prci2g3024 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Prci2g3024 393 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3024 Prci-Chr2 37857596 37861920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3024 35 109 Eukaryotic Initiation Factors Gene Family AT2G36660 29.333 7.28e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3024 K13107 - gmx:100814734 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g3024 2 37857596 37861920 Prci2g3024 2 37857596 37861920 ECH