Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3004 ATGACGTCAGCAAATCTCTCTTCGCCGGTGGCTTCTGCCGTACAATCCATCCACCGTTTATTGACTGATCTCTGCGACCACGAACACCATTACTCATTCGAAAATCCACGACGGTTCTCGGGGTTGGCTCGGCGGCTTCATCTTGTCGTCAACCAGCTACTCCTGTCTGTTCAATCACCGTCGCTGGAGACCTTACCGTCGTCGGTGCAGACCGCCCTGAAGGGAGTGTCCGGCGATCTATCCAAGGCTGCAGAAGTTGTTTCCGTCTATGAGAAAAGCAGCAAGATATTTGTATTGATCAACTGCAAGTCCCTCTGCTCGTCCCTTCTGGAGCACACCTTCTCCATTGGAGGATGGCTCGCCTTGCTTGATGAGGCTCTTCAAGACCATCCCGACCTCCAAAAGAAAGCTTCTGATCTCTCCAGAGACATGAAGCTTGCTCAGTTCAGAGTAATTAGCCCTTTTCTCTTTATTCCGAAGAAATCGAACGAAGAGAGAGTACAATGTACGCTGGAAAAAGAAGGGACAGGAAGACCAACAACCAAGGCGGTGCAGAGTGCTATAGTAATGGATTTGGCTCGCTCTTTGGGGATTGACCCAGGTGATCATATTGAGTTGTCTAACGAAATAAAGCTGTTCAAGAATGACCTATTGCGCTCAAATTCTGTAACGGAGCGGCGGATTTTAACTTCCCTTGAAAGGATTTTGAATAACTGGTCTATTGAACCTGACATTGAGACTCGAAAATTGGACTTTGACCTTGAAGATGATGCAGCGATTTTTCCCTTTAAAAATTTTCTTTGCCCATTGACCAAGGAAGTGATGAAGAACCCCGTGGTTGTGGAAACGTCCCAGACCTATGAACGGACTGCTATAGAGTACTGGTTCGAGAGGTGTATTGAGGATGCTCGTGATCCAACTTGTCCTGTCACTGGAAACGTTCTCAAATCCTTGGAACTGAAACCCAATATTGGACTGGCAGGGGCAATAGAAGAGTGGGTTAACAGGGTTGTGGAGTATCAAGTAAAATCCGCTGCTGAGCACTTGACAGAGGAGCCACTTTGTATTGATCACGTTGAGCGAGCTTTGGATAACATTTATAAGGTTTCAGAAGAGCATCCTGCTAGCAGATATGTAATCAGGAATGCTGGAATTGTGCAACTGATAGTGAAGCTGCTTACTAATAGCTCAAAGATTATTGGATCACGGTTGAGAAGTAAAGCTCTGATGGCTTTAGTTACTTTGGCTAAAGATGAAGAAAGCAAGAAAATAATGCTTGAAGGGAGTGTCACAAGGTTGGCAGTACATAGTCTTATTGGTAGCACAGAGAAAGAGAGAGAGTATGCTGTGAAGTTATTACTGGAGTTCACCAGTGATGAAGCTTGTTGCATAATGGTTGCATCAGAGAAAGGGGCATTAGTTCTCCTCACAAGTATGGCAGGAAATTTAGAGTCTCCTGCTTTGTCCAAGTTAGCTGAGGAAGTCTTAAGGCAGTTGGAGAGGGTGGAGGATAATGTGCAGCGGTTAGCAGCAGCGGGAAGATTTGAACCTTTACTTTCACGGCTGCATGGTGGACCTGATACTGTAAGGATAGAGATGGCATCTCTGCTTGGAAGGATGACCTTGACAAACAGCAATAAAGAGCAAATTGCCAGGCAAAGTGCTGGAGTACTTGTTGACCTGTTGTCGAAGTCAGAGGGAAGAGAACCAAGTCTGCAAGCATTATATAACTTGTCAGGATTGGATGACAATGCAACCATCCTTGTTGAGCCTCCAGTCTTTCCATCTCTTATTGGTGTTCTTTTTGATGACCAGGAGCCTTCAGATGAAATTAAAACATTAGCTGCTTCAACAATTGCAAATATAGTATCAAAGCCGGGGCGTTGGGAATTAGCATCAGCTGACACAAAGGGGAATTCAATGCAGTCAGAAAACATTGTTTTCAGACTTTTGCAACTTTTAGACTCAGTGTCTTCTCAATGTCAAGTATATGTTCTTCGCATTCTCTATGGAATAACATCATCCCCGCAGGCGTCAGAGTCAGTAGCTTTGCATATAAAATCTGGGGATGGCTTTAAAACGGTCGCAAACTTTCTTGAACACCCAGAAGTCGAACTCAGAATATATGCTCTGAAGCTTTTGAGGCTACTATCTGAACTGTTCAGTCAAGGTCTAGGAAATGAGCTGAGACTTTCTAACAAGCTCACCATACTCAAAGAAAAAATGTTAGATGACCAATCTGCAGAGGACGAGAGAGCAACAGCAGCATGTATACTTGCCAACCTTTCCTTAACAGAAGATGAATTAAAATCACTTTTAGGAGGTGATTTCATTAGATGGATCGTCGCTACTCTTCAGAATCAGAGGCGCGGCTCCAATGCAAGGGTTTCACGGACTGCGCTAGGCATGCTGGAAGGTCTTCTTGGTCTCTTACTTCAGTTCACTAGGAGCCTTAATGAGCAAACTCTTACTGTTGTCAGAGAAAATCATCTCATGACCATTTTCTGTCAACAGCTGGAATATAATTCCAAACCAAAGGTCAAAAGACTTGCAGCCCTTGGATTAAAAAGCTTATCAGAATTTGGAAGGGCAGTTATTTCAAGGGACTCTGAACCCTCACCTTCTAGTGGGTTTTGCTCTCCCTTCTTGTTCATTTGTGGAAGGACATCTAATCAAAACTTTTCATGTCCATTTCACAACAGTCCCTGTGAGGAAGAAAGTCAATTGTGCCTGTTTAAGACCAGCTGTATAAAGCCTCTAAATGATCTCTTCAGTGATAATGATACTAGTGTCCAAGTTGCTGCGGTGGAGGCACTTTCAACACTGATATTGGACTATTCGTCAAATAGCTTTAAGAGAGCAGTTGATGAGCTTGAGCAATTGGGTGTGGTTGATTCTGTGATCAAACTTTTCACAGAGGCTAGCTCAGGGGAACTTCAGGAGAAGACCATTTGGATCATAGAGAAAATACTGAGAGTGGAAAATCACATACCTAAGCACTCACTTAATCAGTCTCTTGTGAGGGGCTTGGTTGAAGCCTTTAAGCATGGGAATCCCAACGCCAAGTTGCTTGCTCAAGATGCTTTAACCTACCTAAAGCAAATATCAGTTCTAAGTGAGAGGACATCAAGTCAACCTCGAGCTCGGAGGATTTGA 3156 0.4401 MTSANLSSPVASAVQSIHRLLTDLCDHEHHYSFENPRRFSGLARRLHLVVNQLLLSVQSPSLETLPSSVQTALKGVSGDLSKAAEVVSVYEKSSKIFVLINCKSLCSSLLEHTFSIGGWLALLDEALQDHPDLQKKASDLSRDMKLAQFRVISPFLFIPKKSNEERVQCTLEKEGTGRPTTKAVQSAIVMDLARSLGIDPGDHIELSNEIKLFKNDLLRSNSVTERRILTSLERILNNWSIEPDIETRKLDFDLEDDAAIFPFKNFLCPLTKEVMKNPVVVETSQTYERTAIEYWFERCIEDARDPTCPVTGNVLKSLELKPNIGLAGAIEEWVNRVVEYQVKSAAEHLTEEPLCIDHVERALDNIYKVSEEHPASRYVIRNAGIVQLIVKLLTNSSKIIGSRLRSKALMALVTLAKDEESKKIMLEGSVTRLAVHSLIGSTEKEREYAVKLLLEFTSDEACCIMVASEKGALVLLTSMAGNLESPALSKLAEEVLRQLERVEDNVQRLAAAGRFEPLLSRLHGGPDTVRIEMASLLGRMTLTNSNKEQIARQSAGVLVDLLSKSEGREPSLQALYNLSGLDDNATILVEPPVFPSLIGVLFDDQEPSDEIKTLAASTIANIVSKPGRWELASADTKGNSMQSENIVFRLLQLLDSVSSQCQVYVLRILYGITSSPQASESVALHIKSGDGFKTVANFLEHPEVELRIYALKLLRLLSELFSQGLGNELRLSNKLTILKEKMLDDQSAEDERATAACILANLSLTEDELKSLLGGDFIRWIVATLQNQRRGSNARVSRTALGMLEGLLGLLLQFTRSLNEQTLTVVRENHLMTIFCQQLEYNSKPKVKRLAALGLKSLSEFGRAVISRDSEPSPSSGFCSPFLFICGRTSNQNFSCPFHNSPCEEESQLCLFKTSCIKPLNDLFSDNDTSVQVAAVEALSTLILDYSSNSFKRAVDELEQLGVVDSVIKLFTEASSGELQEKTIWIIEKILRVENHIPKHSLNQSLVRGLVEAFKHGNPNAKLLAQDALTYLKQISVLSERTSSQPRARRI 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3004 1051 SMART Ubox_2 265 333 IPR003613 GO:0004842|GO:0016567
Prci2g3004 1051 Gene3D - 350 863 IPR011989 -
Prci2g3004 1051 SMART arm_5 581 624 IPR000225 GO:0005515
Prci2g3004 1051 SMART arm_5 373 417 IPR000225 GO:0005515
Prci2g3004 1051 SMART arm_5 543 580 IPR000225 GO:0005515
Prci2g3004 1051 SMART arm_5 903 944 IPR000225 GO:0005515
Prci2g3004 1051 SMART arm_5 818 860 IPR000225 GO:0005515
Prci2g3004 1051 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 34 1039 - -
Prci2g3004 1051 CDD RING-Ubox_PUB 266 320 IPR045210 -
Prci2g3004 1051 Gene3D - 894 1044 IPR011989 -
Prci2g3004 1051 SUPERFAMILY ARM repeat 356 678 IPR016024 -
Prci2g3004 1051 Pfam U-box domain 265 335 IPR003613 GO:0004842|GO:0016567
Prci2g3004 1051 ProSiteProfiles U-box domain profile. 261 340 IPR003613 GO:0004842|GO:0016567
Prci2g3004 1051 SUPERFAMILY ARM repeat 686 1032 IPR016024 -
Prci2g3004 1051 Coils Coil 123 143 - -
Prci2g3004 1051 SUPERFAMILY RING/U-box 264 336 - -
Prci2g3004 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 349 IPR013083 -
Prci2g3004 1051 Coils Coil 492 512 - -
Prci2g3004 1051 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 430 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3004 Prci-Chr2 37544380 37550022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3004 263 1039 U-box Gene Family AT1G20780 29.073 5.71e-87 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3004 - - pcin:129304037 1981.07