Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2988 ATGTCTAGGATATGTGTCAAGAATCTACCAAAATATGTTGCAGAGGATCGTCTAAGGGACTTATTTTCACAGAAAGGAGAAATAACAGATGTCAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTTATAGGGTTTCGTACAGAGGATGAAGCCAATGAAGCTATAAAATATTTCAATAGATCCTACCTTGATACATGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAAATATTCCTCGTCCATGGAGCCGACATTCATTGAAGAAAGGGGAAGAAGTGATCAAGGGTGTGAAGAAAGATGCTGAAAATAAAAGTAGTGCTAAGGCACAAAGAAGTGGAGAGAATTTGAAGGAGAGCAATGACTTTGATGATCCACAGCTTCAAGAATTCCTTCAGGTTATGCAGCCTTGGGCAAAGACAAAATTGTGGGCAAATGATACATTATCAATGTTGGATAATGTTAGTGAGAAGCAAAAAATAGATAGTCACGAATCTGAGAAACCCAACAATCTTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAAGAGTGGTCTGATTCTGAAAATGGTGATGATGATGAAGACAACAATGCCTGTGTGAGCAATGACAGTGACAATGAAGAAGACAATGATAATCATTGTGATGAAGATGAACGTTGTGATGATAAATCTGCGAAAGGAACATGTGGTGTTCAAAACTTAGGCCTGTCAGGCCAGGAAGATATCTTTAATGAGGATAATGACCATGAAAAGATTGAAACTAGAGGCCCTTCTAATTCTTCTGGTGATGAAGTACCTGAGCAAGGGGTCCCTTCATCATGTTTGGCAGATGAGAAAGGAGTTTTTGAATCTCGTCGACTTTTTGTCCGTAATCTGCCATATACAGCCTCTGAGGAGGAACTTGAAGAACACTTCAGTAAGTTTGGCACTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAAAGGTCCAAAGGGATAGCTTATGTTCTTTACACGCTTCCAGAATTTGCAGCCAGGGCACTAGAAGAGTTAGACAATTCAATTTTCCAAGGAAGATTGTTGCATGTTTTGCCAGCTGTGCAAAGACCTTCAGACAGCAAGGAAAAGAATTCATCAGTGGACCAAGGCTCCAGAACTTTTAAGAAACAGAGAGAGGAAGAGCGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCTCTGACACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGTAAAAGTGATTTACTCGACCAAGAAGCTGATGACCTTGCTGTGCGTATTGCTTTGGGTGAAACTCAAGTGATTGCTGAGACAAAAAAGGCCCTTAAAAATGCTGGCGTGAATGTGGAGTCTCTGGAGGAATTTGCCAATGGCCAAAAAGTTGGTGTGAAAAGAAGCAACCATGTGTTGTTAGTGAAGAACTTGCCATATGGTTCCTCAGAAAATGAACTAGCAAAGATGTTTGGGAAATTTGGGAGTTTGGACAAAATAATTCTGCCTCCAACAAAGACGTTGGCCTTGGTTGTCTACCTTGAACCAGCTGAAGCTCGAGCGGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCGCCATTGTATTTGGAATGGGCTCCTTCGAATGTTCTTAGCCAAAGTTTAACATCTGAGAACAATGAAAAGAATGGTCCAATTGGTGAAAATGAGGCCAAACGGGTGATATTGGAACAACATCTGGAAGGAGTATCAGATGTGGAGATTGATCAGGACAGAGTTGAGGCACGGTCTCTATTTGTCAAGAACATCAACTTTAAGACATCAGATGAGAGTTTGAAGAATCATTTTAGTGAACACGTGAAAGAGGGAAGAATTTTGAGTGCCAAGGTGAAGAAGCATTTGAAAAATGGAAAACAGGTTTCTATGGGATTTGGATTCATTGAGTTTGATTCTGTGGAGACTGCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATTTTACAACTGTGCCATGCTAAGGACCGGCAAGTACCAAAAACAGTTGAGAAAGGCAAAAGCTCAACAAAATTACTCATAAGAAACGTAGCTTTTGAGGCGACAGAGAAGGAATTGAGACAGTTGTTCAGCCCATTCGGTCAGATTAAGAGCTTAAGGTTGCCAATGAAGTTTGGAAGTCATAGAGGATTTGCTTTTGTGGAATATGTTACACAGCAAGAGGCACAAAATGCACTTAAAGCTCTTGCAAGCACCCACCTGTACGGCAGGCATCTGGTGTTAGAGAGAGCAAAGGAAGGCGAGAGCCTGGAGGAACTACGGGCTCGAACAGCTGCACAATTTAGTGATGAGCAAAATGGATTTCAAAAGTTATCCAGGAAAAGGAAGCACTTGTCCATCTTGGATGAAGGAGGGATAAAGTTTGAAAGAATTGCTGATTAG 2511 0.4114 MSRICVKNLPKYVAEDRLRDLFSQKGEITDVKLMRTKDGKSRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPNIPRPWSRHSLKKGEEVIKGVKKDAENKSSAKAQRSGENLKESNDFDDPQLQEFLQVMQPWAKTKLWANDTLSMLDNVSEKQKIDSHESEKPNNLVHDDAISDMEYFKSRVTKEWSDSENGDDDEDNNACVSNDSDNEEDNDNHCDEDERCDDKSAKGTCGVQNLGLSGQEDIFNEDNDHEKIETRGPSNSSGDEVPEQGVPSSCLADEKGVFESRRLFVRNLPYTASEEELEEHFSKFGTVSQVHLVVDKDTKRSKGIAYVLYTLPEFAARALEELDNSIFQGRLLHVLPAVQRPSDSKEKNSSVDQGSRTFKKQREEERKAAEASGDTRAWNSLFMRSDTVVENIARKYGVSKSDLLDQEADDLAVRIALGETQVIAETKKALKNAGVNVESLEEFANGQKVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSQSLTSENNEKNGPIGENEAKRVILEQHLEGVSDVEIDQDRVEARSLFVKNINFKTSDESLKNHFSEHVKEGRILSAKVKKHLKNGKQVSMGFGFIEFDSVETATNVCRDLQGTVLDGHALILQLCHAKDRQVPKTVEKGKSSTKLLIRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALASTHLYGRHLVLERAKEGESLEELRARTAAQFSDEQNGFQKLSRKRKHLSILDEGGIKFERIAD 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2988 836 MobiDBLite consensus disorder prediction 201 229 - -
Prci2g2988 836 MobiDBLite consensus disorder prediction 256 271 - -
Prci2g2988 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Prci2g2988 836 FunFam Multiple RNA-binding domain-containing protein 1 708 813 - -
Prci2g2988 836 SMART rrm2_1 3 75 IPR003954 GO:0003676
Prci2g2988 836 SMART rrm2_1 300 373 IPR003954 GO:0003676
Prci2g2988 836 SMART rrm2_1 615 693 IPR003954 GO:0003676
Prci2g2988 836 MobiDBLite consensus disorder prediction 383 409 - -
Prci2g2988 836 FunFam Multiple RNA-binding domain-containing protein 1 485 587 - -
Prci2g2988 836 MobiDBLite consensus disorder prediction 104 129 - -
Prci2g2988 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 614 697 IPR000504 GO:0003723
Prci2g2988 836 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 595 707 - -
Prci2g2988 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 494 566 IPR000504 GO:0003723
Prci2g2988 836 FunFam Multiple RNA-binding domain-containing protein 1 1 128 - -
Prci2g2988 836 Gene3D - 705 813 IPR012677 -
Prci2g2988 836 Gene3D - 486 591 IPR012677 -
Prci2g2988 836 SUPERFAMILY RNA-binding domain, RBD 613 789 IPR035979 GO:0003676
Prci2g2988 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Prci2g2988 836 MobiDBLite consensus disorder prediction 195 286 - -
Prci2g2988 836 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Prci2g2988 836 MobiDBLite consensus disorder prediction 380 409 - -
Prci2g2988 836 SMART rrm1_1 300 373 IPR000504 GO:0003723
Prci2g2988 836 SMART rrm1_1 495 562 IPR000504 GO:0003723
Prci2g2988 836 SMART rrm1_1 714 785 IPR000504 GO:0003723
Prci2g2988 836 SMART rrm1_1 615 693 IPR000504 GO:0003723
Prci2g2988 836 SMART rrm1_1 3 75 IPR000504 GO:0003723
Prci2g2988 836 CDD RRM3_RBM19_RRM2_MRD1 300 373 - -
Prci2g2988 836 CDD RRM1_MRD1 2 77 - -
Prci2g2988 836 Gene3D - 1 128 IPR012677 -
Prci2g2988 836 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 713 789 IPR000504 GO:0003723
Prci2g2988 836 SUPERFAMILY RNA-binding domain, RBD 491 579 IPR035979 GO:0003676
Prci2g2988 836 SUPERFAMILY RNA-binding domain, RBD 292 394 IPR035979 GO:0003676
Prci2g2988 836 Gene3D - 611 704 IPR012677 -
Prci2g2988 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 715 782 IPR000504 GO:0003723
Prci2g2988 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 496 558 IPR000504 GO:0003723
Prci2g2988 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 371 IPR000504 GO:0003723
Prci2g2988 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 616 690 IPR000504 GO:0003723
Prci2g2988 836 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Prci2g2988 836 CDD RRM6_RBM19_RRM5_MRD1 713 787 - -
Prci2g2988 836 Gene3D - 181 389 IPR012677 -
Prci2g2988 836 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 300 406 - -
Prci2g2988 836 CDD RRM4_RBM19_RRM3_MRD1 494 565 - -
Prci2g2988 836 CDD RRM5_RBM19_like 615 695 IPR034423 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2988 Prci-Chr2 37264754 37277076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2988 609 805 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 6.98e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2988 K14787 - vvi:100247562 1105.12