Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2986 ATGTCTAGGATATGTGTCAAGAATCTACCAAAATATGTTGCAGAGGATCGTCTAAGGGACTTATTTTCACAGAAAGGAGAAATAACAGATGTCAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTTATAGGGTTTCGTACAGAGGATGAAGCCAATGAAGCTATAAAATATTTCAATAGATCCTACCTTGATACATGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAAATATTCCTCGTCCATGGAGCCGACATTCATTGAAGAAAGGGGAAGAAGTGATCAAGGGTGTGAAGAAAGATGCTGAAAATAAAAGTAGTGCTAAGGCACAAAGAAGTGGAGAGAATTTGAAGGAGAGCAATGACTTTGATGATCCACAGCTTCAAGAATTCCTTCAGGTTATGCAGCCTTGGGCAAAGACAAAATTGTGGGCAAATGATACATTATCAATGTTGGATAATGTTAGTGAGAAGCAAAAAATAGGTGAGAACAGAAACAAGGATCTTTCAGTTCCAACGCATGACGAGTTACTTGAAAGTGGCTCATTAGATGATGGGTCCTCAGATAGTCACGAATCTGAGAAACCCAACAATCTTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAAGAGTGGTCTGATTCTGAAAATGGTGATGATGATGAAGACAACAATGCCTGTGTGAGCAATGACAGTGACAATGAAGAAGACAATGATAATCATTGTGATGAAGATGAACGTTGTGATGATAAATCTGCGAAAGGAACATGTGGTGTTCAAAACTTAGGCCTGTCAGGCCAGGAAGATATCTTTAATGAGGATAATGACCATGAAAAGATTGAAACTAGAGGCCCTTCTAATTCTTCTGGTGATGAAGTACCTGAGCAAGGGGTCCCTTCATCATGTTTGGCAGATGAGAAAGGAGTTTTTGAATCTCGTCGACTTTTTGTCCGTAATCTGCCATATACAGCCTCTGAGGAGGAACTTGAAGAACACTTCAGTAAGTTTGGCACTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAAAGGTCCAAAGGGATAGCTTATGTTCTTTACACGCTTCCAGAATTTGCAGCCAGGGCACTAGAAGAGTTAGACAATTCAATTTTCCAAGGAAGATTGTTGCATGTTTTGCCAGCTGTGCAAAGACCTTCAGACAGCAAGGAAAAGAATTCATCAGTGGACCAAGGCTCCAGAACTTTTAAGAAACAGAGAGAGGAAGAGCGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCTCTGACACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGTAAAAGTGATTTACTCGACCAAGAAGCTGATGACCTTGCTGTGCGTATTGCTTTGGGTGAAACTCAAGTGATTGCTGAGACAAAAAAGGCCCTTAAAAATGCTGGCGTGAATGTGGAGTCTCTGGAGGAATTTGCCAATGGCCAAAAAGTTGGTGTGAAAAGAAGCAACCATGTGTTGTTAGTGAAGAACTTGCCATATGGTTCCTCAGAAAATGAACTAGCAAAGATGTTTGGGAAATTTGGGAGTTTGGACAAAATAATTCTGCCTCCAACAAAGACGTTGGCCTTGGTTGTCTACCTTGAACCAGCTGAAGCTCGAGCGGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCGCCATTGTATTTGGAATGGGCTCCTTCGAATGTTCTTAGCCAAAGTTTAACATCTGAGAACAATGAAAAGAATGGTCCAATTGGTGAAAATGAGGCCAAACGGGTGATATTGGAACAACATCTGGAAGGAGTATCAGATGTGGAGATTGATCAGGACAGAGTTGAGGCACGGTCTCTATTTGTCAAGAACATCAACTTTAAGACATCAGATGAGAGTTTGAAGAATCATTTTAGTGAACACGTGAAAGAGGGAAGAATTTTGAGTGCCAAGGTGAAGAAGCATTTGAAAAATGGAAAACAGGTTTCTATGGGATTTGGATTCATTGAGTTTGATTCTGTGGAGACTGCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATTTTACAACTGTGCCATGCTAAGGACCGGCAAGTACCAAAAACAGTTGAGAAAGGCAAAAGCTCAACAAAATTACTCATAAGAAACGTAGCTTTTGAGGCGACAGAGAAGGAATTGAGACAGTTGTTCAGCCCATTCGGTCAGATTAAGAGCTTAAGGTTGCCAATGAAGTTTGGAAGTCATAGAGGATTTGCTTTTGTGGAATATGTTACACAGCAAGAGGCACAAAATGCACTTAAAGCTCTTGCAAGCACCCACCTGTACGGCAGGCATCTGGTGTTAGAGAGAGCAAAGGAAGGCGAGAGCCTGGAGGAACTACGGGCTCGAACAGCTGCACAATTTAGTGATGAGCAAAATGGATTTCAAAAGTTATCCAGGAAAAGGAAGCACTTGTCCATCTTGGATGAAGGAGGGATAAAGTTTGAAAGAATTGCTGATTAG 2592 0.4124 MSRICVKNLPKYVAEDRLRDLFSQKGEITDVKLMRTKDGKSRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPNIPRPWSRHSLKKGEEVIKGVKKDAENKSSAKAQRSGENLKESNDFDDPQLQEFLQVMQPWAKTKLWANDTLSMLDNVSEKQKIGENRNKDLSVPTHDELLESGSLDDGSSDSHESEKPNNLVHDDAISDMEYFKSRVTKEWSDSENGDDDEDNNACVSNDSDNEEDNDNHCDEDERCDDKSAKGTCGVQNLGLSGQEDIFNEDNDHEKIETRGPSNSSGDEVPEQGVPSSCLADEKGVFESRRLFVRNLPYTASEEELEEHFSKFGTVSQVHLVVDKDTKRSKGIAYVLYTLPEFAARALEELDNSIFQGRLLHVLPAVQRPSDSKEKNSSVDQGSRTFKKQREEERKAAEASGDTRAWNSLFMRSDTVVENIARKYGVSKSDLLDQEADDLAVRIALGETQVIAETKKALKNAGVNVESLEEFANGQKVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSQSLTSENNEKNGPIGENEAKRVILEQHLEGVSDVEIDQDRVEARSLFVKNINFKTSDESLKNHFSEHVKEGRILSAKVKKHLKNGKQVSMGFGFIEFDSVETATNVCRDLQGTVLDGHALILQLCHAKDRQVPKTVEKGKSSTKLLIRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALASTHLYGRHLVLERAKEGESLEELRARTAAQFSDEQNGFQKLSRKRKHLSILDEGGIKFERIAD 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2986 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 641 724 IPR000504 GO:0003723
Prci2g2986 863 FunFam Multiple RNA-binding domain-containing protein 1 1 128 - -
Prci2g2986 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Prci2g2986 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 398 IPR000504 GO:0003723
Prci2g2986 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 643 717 IPR000504 GO:0003723
Prci2g2986 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 742 809 IPR000504 GO:0003723
Prci2g2986 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Prci2g2986 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 523 585 IPR000504 GO:0003723
Prci2g2986 863 CDD RRM4_RBM19_RRM3_MRD1 521 592 - -
Prci2g2986 863 FunFam Multiple RNA-binding domain-containing protein 1 512 614 - -
Prci2g2986 863 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 327 433 - -
Prci2g2986 863 Gene3D - 513 618 IPR012677 -
Prci2g2986 863 Gene3D - 732 840 IPR012677 -
Prci2g2986 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 740 816 IPR000504 GO:0003723
Prci2g2986 863 MobiDBLite consensus disorder prediction 283 298 - -
Prci2g2986 863 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Prci2g2986 863 MobiDBLite consensus disorder prediction 104 129 - -
Prci2g2986 863 MobiDBLite consensus disorder prediction 228 256 - -
Prci2g2986 863 MobiDBLite consensus disorder prediction 169 227 - -
Prci2g2986 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 404 IPR000504 GO:0003723
Prci2g2986 863 SMART rrm2_1 642 720 IPR003954 GO:0003676
Prci2g2986 863 SMART rrm2_1 3 75 IPR003954 GO:0003676
Prci2g2986 863 SMART rrm2_1 327 400 IPR003954 GO:0003676
Prci2g2986 863 MobiDBLite consensus disorder prediction 410 436 - -
Prci2g2986 863 Gene3D - 207 416 IPR012677 -
Prci2g2986 863 SUPERFAMILY RNA-binding domain, RBD 319 421 IPR035979 GO:0003676
Prci2g2986 863 CDD RRM3_RBM19_RRM2_MRD1 327 400 - -
Prci2g2986 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 521 593 IPR000504 GO:0003723
Prci2g2986 863 CDD RRM1_MRD1 2 77 - -
Prci2g2986 863 MobiDBLite consensus disorder prediction 169 313 - -
Prci2g2986 863 SUPERFAMILY RNA-binding domain, RBD 518 606 IPR035979 GO:0003676
Prci2g2986 863 SUPERFAMILY RNA-binding domain, RBD 640 816 IPR035979 GO:0003676
Prci2g2986 863 CDD RRM5_RBM19_like 642 722 IPR034423 -
Prci2g2986 863 FunFam Multiple RNA-binding domain-containing protein 1 735 840 - -
Prci2g2986 863 Gene3D - 1 128 IPR012677 -
Prci2g2986 863 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 622 734 - -
Prci2g2986 863 Gene3D - 638 731 IPR012677 -
Prci2g2986 863 MobiDBLite consensus disorder prediction 407 436 - -
Prci2g2986 863 SMART rrm1_1 642 720 IPR000504 GO:0003723
Prci2g2986 863 SMART rrm1_1 741 812 IPR000504 GO:0003723
Prci2g2986 863 SMART rrm1_1 327 400 IPR000504 GO:0003723
Prci2g2986 863 SMART rrm1_1 3 75 IPR000504 GO:0003723
Prci2g2986 863 SMART rrm1_1 522 589 IPR000504 GO:0003723
Prci2g2986 863 CDD RRM6_RBM19_RRM5_MRD1 740 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2986 Prci-Chr2 37264754 37277076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2986 636 832 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 8.75e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2986 K14787 - vvi:100247562 1119.38