Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2958 ATGACAAGGTTAGCAGCAACCTCTTCTTCCTTCCACTATCAATGGACTTATGATGTCTTCATCAATTTTAGAGGTGAAGACACCCGTCATGGTTTTACTGGAAATATGTATCACGCTCTAAGTCAAAAGGGAGTTCGCACCTTCATTGATGATGAGGAACTAAGAAGAGGGGATGAAATTACACCAACACTTCTCAAAGCAATTGAAAATTCTAGGATGGCTATTATTGTATTTTCTAAGAACTATATTTCCTCAACATTTTGTCTCAATGAACTTGTTAAAATCCATCAGTGTATTAAGGGAAAGTCTCGGCTAGTTTTGCCCATTTTTTATGATGTGGAGCCTTCAGAAGTGCGACATCAAACAGGAAATTATGAACATGCATGGACTATGCATAAAATAAACTTCAGAGCTGATAAAAAGAAGATACAGAGTTGGAAGCTTGCATTGCATGAAATAGCTAATATCTCTGGCTTACATTTTAATCCTAGGCATGGATATGAATATCAATTTGTTGATAGGATTGTGAAAGAAATCTCTGGTAAAATAAATCGAGTTCCTTTACATATTGCTAAATATCCTATTGGGTTAGACTCTCGAGTGCAAAAAATTAACTCTCTCTTAGAAATTGAGTCCAATGACAAGGTCTACATGGTAGGAATTTTTGGAATTGGTGGAATGGGTAAAACAACAATAGCACGTGCTGTGTATAATTCAATTGCTGATAATTTTGAAGGTCTTTGCTTTCTCCATGATATCAAAGAAAACTCAAGGAAACTTGGCTTAGAACAAATGCAAGAGAAACTGCTTTCAAAGATTGCTAGAGTGGACATCAAAGTAGAAGATATCAATGAAGGAGTCGAGTTAATAAAAATGAGACTCATGCAAAAGAGAATTCTTTTGATTCTTGATAATGTTGACAAATGTGAGCAATTAGAAAAGTTAGCTGGTGATTGCAATTGGTTTGGAAGTGGTAGTAGGATCATTATAACAACACGAGACAAACAGGTACTTGTAATGCATGGAGTTGAAAGAAAATATGACATAGAGGCATTCAATGCTAAAGAATCTCTTGAATTGTTAAGTTGGAATGCCTTTAGAAATAACCAAGTAAATGAAAGTCACATGGAGGTTTTGAACCGTGCAATAGTTTATGCACAGGGTCTTCCATTAGCCCTTGAAGTAATAGGCTCTAACTTGTGTGGTATGGATGTAACTGAGTGGGAATCTGTGTTAGATTTATACAAAAGAATTCCCAATGAAAACATTCAACAAATATTGAAAGTAAGTTATGATGGCTTAAAGCAAGTTGAAAAAGAAATATTCCTTGACATTGCTTGTTTCTTTAAAGCCAAAGATTTGGAATATGTCAGGTATATGGTGGAACAAGTTCATGGTTTTGATCCAAGTTATTTTGTTAGAGTTTTGGAAGACAAATGCCTCATAAATATTGGAAAATATTGTATTGAAATGCATGATTTGGTACAAGACATGGGGAGAGAAATTGTTCGTCAAGAATCACCAAAAGAGCCAGGAAAACGCAGCAGATTATGGTTTCATCATGACATTATTCATGTTTTGGAAGAAAATACACCTGTAGAAGGAAGCGAAGTGACTATGAAGCTCGACTTGAGTGTGTTGAAGCGAGATACTTGTAGAGTTTTGGTGAAAATATTAGCAAGTTGA 1686 0.3523 MTRLAATSSSFHYQWTYDVFINFRGEDTRHGFTGNMYHALSQKGVRTFIDDEELRRGDEITPTLLKAIENSRMAIIVFSKNYISSTFCLNELVKIHQCIKGKSRLVLPIFYDVEPSEVRHQTGNYEHAWTMHKINFRADKKKIQSWKLALHEIANISGLHFNPRHGYEYQFVDRIVKEISGKINRVPLHIAKYPIGLDSRVQKINSLLEIESNDKVYMVGIFGIGGMGKTTIARAVYNSIADNFEGLCFLHDIKENSRKLGLEQMQEKLLSKIARVDIKVEDINEGVELIKMRLMQKRILLILDNVDKCEQLEKLAGDCNWFGSGSRIIITTRDKQVLVMHGVERKYDIEAFNAKESLELLSWNAFRNNQVNESHMEVLNRAIVYAQGLPLALEVIGSNLCGMDVTEWESVLDLYKRIPNENIQQILKVSYDGLKQVEKEIFLDIACFFKAKDLEYVRYMVEQVHGFDPSYFVRVLEDKCLINIGKYCIEMHDLVQDMGREIVRQESPKEPGKRSRLWFHHDIIHVLEENTPVEGSEVTMKLDLSVLKRDTCRVLVKILAS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2958 561 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Prci2g2958 561 SUPERFAMILY "Winged helix" DNA-binding domain 422 528 IPR036390 -
Prci2g2958 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Prci2g2958 561 Gene3D - 188 347 IPR027417 -
Prci2g2958 561 Pfam TIR domain 17 184 IPR000157 GO:0007165
Prci2g2958 561 SMART till_3 16 156 IPR000157 GO:0007165
Prci2g2958 561 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Prci2g2958 561 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Prci2g2958 561 Gene3D - 11 187 IPR035897 -
Prci2g2958 561 Pfam NB-ARC domain 201 432 IPR002182 GO:0043531
Prci2g2958 561 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 535 IPR044974 GO:0006952
Prci2g2958 561 Gene3D - 352 435 IPR042197 -
Prci2g2958 561 PRINTS Disease resistance protein signature 293 307 - -
Prci2g2958 561 PRINTS Disease resistance protein signature 386 400 - -
Prci2g2958 561 PRINTS Disease resistance protein signature 218 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2958 Prci-Chr2 35841863 35844799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2958 11 551 WRKY Transcription Factor Family AT4G12020 30.978 2.15e-57 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2958 - - pcin:129292875 741.495