Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2937 ATGAACAATAGTGTTCCTGCTTGTAATTTTCAGAGTAATAGCAGTTTCACCTATCAAAAGAATCCCATGGGACCAGATCAAGAACTTGTAGAGCTCCTATGGCCAAAAGGACAGGTAGTTTTGAATAGCCAAAGCCAAACACATAAGAAACCAGTTTTGAATTCTGTAAACTCAAGGCGGGTGCAGAATAATGATCAATCAGCATTGAAGACTAGTGGATCATATGGGAACTCGAGTAATTTGTTTCAAGAAGATGAGACAGTCTCATGGATCCAATTCCCACTGGAAGATCCACTGGAACAAGAATTATGTTCAGACTTTTTACCTGAACTTCGATCCAGTGAGATTGAACCTGATAAGCCTAATAAGTGGTTTGAGGAAGAGAAGTTTGCCAAATTCACTACCGATGGTGCCTCTCATCTGACTGCAACTTCACAACCTTCTACTATGAAACTGCCCTCTGTTCAGAAATTCCCAGGAAATCCTATCCTTTCTCCTAGATTTTTTCCTGATTCATCTCAGAAAAACGTTGAGTTTTATGGTTCACCAAAAGTCCTCAATTTTTCTGAGTTTACAGCAGTTCCTAAGGTTGCTTCAACATCTTCTATTGCACAACATGGAGAAAAAGGTACAGGTAATATGTTGCAAAATGAGGCTGGAGAGGGCTCAGTGATGACAGCCGGTTCAAGTCATTGTGGCAGCAATCAAATTCCTCGAGACCGAGATGTGAGCAGGATTTCAAGCAAAGGTTTTTGGACTACTAATTTGTTAGCAGAGCCTTCTGTCTTCAGGGATAATGTTCGGAGAACATTTCCTATGGGTGAAAAAGGGAAATCAGAAACACATGAACCAACTGTCACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGAAAAAACTTGTTGCCAGTCTACTAGTATCCATAGCCAGAAAAGTAAAGGGACAGATGCTGAAGAGTTAGAGAAACAAAGTGAGACCACAGAACTCAAATCAGTAGCTAGAAAGAGGGCAGCTCAGCGAACAGGGTCTTCCCGAAGGAACCGTGCTGCTGAAGTGCATAATCTCTCAGAAAGGAGACGGAGAGACAGGATCAACGAGAAGATGAGGGCGTTGCAACAACTCATACCTCACAGTAACAAGACAGACAAAGCATCAATGCTAGATGAGGCAATAGAATATTTGAAATCACTTCAGTTTCAGCTTCAGATGATGTTGATGGGAGCTGGCATGACCCCGGTGATGATCCCAGGAATTCAGCACTACATGTCTCAAATGGATATGGGATTGGCGACACCTTCTTTGTCTAATCATATGAATATACCAAGAGTGGATCAATCCATATCCATGTCTCGAGCACCAAATCAGACTGTAACATTCAAAGCTCCTGTTCTGGCTCCCTTTAATTACCAAAATCATATGCAAAATCCAGCTCTTTCTGAGCAATATGCACGCTGTATGGGCTATCATCTTATGCAAAGTGCCTCTCAGCCAATGAATGCACTCAGTTATGGCTCCCAGACAGTACAACATAGTCAAACAATGATTCCAGCCAGCAATAACAACGGACCCCTGAGTGGGGCAGCTAATACCATTGATGCTGTAGGTGGCAGGATGGGTAAGCCACAATGA 1629 0.4254 MNNSVPACNFQSNSSFTYQKNPMGPDQELVELLWPKGQVVLNSQSQTHKKPVLNSVNSRRVQNNDQSALKTSGSYGNSSNLFQEDETVSWIQFPLEDPLEQELCSDFLPELRSSEIEPDKPNKWFEEEKFAKFTTDGASHLTATSQPSTMKLPSVQKFPGNPILSPRFFPDSSQKNVEFYGSPKVLNFSEFTAVPKVASTSSIAQHGEKGTGNMLQNEAGEGSVMTAGSSHCGSNQIPRDRDVSRISSKGFWTTNLLAEPSVFRDNVRRTFPMGEKGKSETHEPTVTSSSGGSGSSLEKTCCQSTSIHSQKSKGTDAEELEKQSETTELKSVARKRAAQRTGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQFQLQMMLMGAGMTPVMIPGIQHYMSQMDMGLATPSLSNHMNIPRVDQSISMSRAPNQTVTFKAPVLAPFNYQNHMQNPALSEQYARCMGYHLMQSASQPMNALSYGSQTVQHSQTMIPASNNNGPLSGAANTIDAVGGRMGKPQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2937 542 Pfam Helix-loop-helix DNA-binding domain 352 398 IPR011598 GO:0046983
Prci2g2937 542 CDD bHLH_AtPIF_like 348 411 IPR047265 -
Prci2g2937 542 MobiDBLite consensus disorder prediction 44 77 - -
Prci2g2937 542 Gene3D - 343 405 IPR036638 GO:0046983
Prci2g2937 542 MobiDBLite consensus disorder prediction 517 542 - -
Prci2g2937 542 MobiDBLite consensus disorder prediction 272 354 - -
Prci2g2937 542 SMART finulus 354 403 IPR011598 GO:0046983
Prci2g2937 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Prci2g2937 542 MobiDBLite consensus disorder prediction 283 311 - -
Prci2g2937 542 MobiDBLite consensus disorder prediction 312 335 - -
Prci2g2937 542 PANTHER TRANSCRIPTION FACTOR PIF3 12 518 IPR044273 GO:0003700|GO:0006355
Prci2g2937 542 FunFam Basic helix-loop-helix transcription factor 343 406 - -
Prci2g2937 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 412 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2937 Prci-Chr2 35290626 35294570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2937 9 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 32.008 3.11e-44 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g2937 HLH 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2937 K16189 - gmx:100784531 607.06