Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2894 ATGAAGGCTTCCCATCAATGTCTTGCTAATGAATTCAATTCTGCACAAGTAGAGCACTGTATTGAGAAAATAAAGAATTTGGGGCATGGAGAAACATCTTCTATCATCAAAGAAGCTATCATGGAACAAGTGGAAGGCTTAGGACCTAGTTCAGAGGTCCTTGAAAAAATTATTGAGAATCTAGGCTTAAGTTCTAACCAAGAGGTTCTGATTGAGGCTGTGACACTTGAAAAGTTCAAGGAGAATGCAGAACAGATTGAAAATTTTGCAGAAGCTGAATATCTAAACCAGATTATTACTCTTGCAACTCGAATGCATGAGAGTCTTATAATGCTGAAACAAGCCCAGAGTTATAGCCCAGTTCCAGTACCTCTAGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGAAAGATCCTGTGATTGTGTCATCAGGGCAAACTTATGAGCGAGCTTTTATTAAGAATTGGATCGATCTCGGGCTTGATGTTTGTCCAAAGACACGTCAGACTCTGACTCATACCAACCTAATACCAAACTATACCGTAAAAGCACTGATTACAAATTGGTGTGAGTTGAACAATGTCAAGCTACGTGATCCTATAATGTCCTTAAACTTGAATCATTGTAGTTCAACTTCAGAAGGTTCTTCAAGTGACATCACTAGCAGGAAAAGTTTTGATATTTTAAGAATATCACAATCACGTTCTGATGACATCATGTCTACTAGTTTAGATGAAATGAGTGTGGATTTAGTTAGCCAAGATTCACCATATACAATGGAATCTTCCAATGCCTTCAACTCAGAACAATCTCAAGCTGATCTTGCACTTTCAAATGAAAACTTCCCTCAAGGAAATAAAGCTGATAGTAGTTCTTCTATGGAGGTGAATCCAAAGTTAGAAACCACCAGTGCTACTGTCTTGAATGCTCAGAGAGAACCTGAGTTCTCAGCTCCATCATTAGAGGCAAGGCCTCAAGTCTTAAGTATATGGCAGCATCCACCAGGGAATTTAAGGTTAGCTTCTTCATTACCTGCAATTGAAATTAGACCAAGTCCTTCTGGTATTGAAACCCAAGTTCAGAATTTGGCCAAAGACTTGAAGAGCTCTTCAATTGATACTCAGAGAGAAGCAACAGAAGAACTCCGCCTTCTTGCGAAGCATAATGTGGAGAATCGAATTGTGATTGCAAATTGTGGAGTTATTAGCCCATTAGTGGACTTACTCCAGTCTTCTGATACAAAGGTCCAAGAAAATGCCGTGACGGCACTTCTAAACCTATCAATCAATGATAATAACAAAACTGCAATTGCAAATGCTGGTGCAATCGATTTTCTAATTCATGTTCTTGGAACAGGATGTCCTGAAGCCAAGGAGAATTCAGCAGCAACACTTTATAGCCTATCAATGATGGAAGAAAACAGGATCAGGATTGGTAGATCAGGGGCAATTAAGCCACTGGTTGATTTATTAGCAAATGGAACTTCAAGAGGAAAGAAAGATGCTTCCACTGCTTTGTTTAACCTCTCAATATTTCACGAAAACAAAGGTCGTATCGTGCAAGCTGGCGCTGTGAAGTACCTCGTGGAGCTAATGGATCCGGCAGCTGGAATGGCAGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCATCTATTCCAGAAGGAAGAACTGAAATTGTTCATGAAGGTGCTATTCCTATTCTAGTTGATGTTATTGAATTAGGTTCTACAAGAGGGAAGGAAAATGCAGCAGCTACTTTGCTGCATATTTGCTCAAATAGTAGCAGGTTTTTAAGCATTATGATCCATGAAGGAGCTATCCCACCATTAGTAGCATTGTCACTATCTGGTACTCCAAGGGCTAAAGAAAAAGCTCAAGCTCTGCTTAACCACTGTAGAAGTCAAAGACATGGCAGTGCTAGAAGAGGTTGA 1932 0.398 MKASHQCLANEFNSAQVEHCIEKIKNLGHGETSSIIKEAIMEQVEGLGPSSEVLEKIIENLGLSSNQEVLIEAVTLEKFKENAEQIENFAEAEYLNQIITLATRMHESLIMLKQAQSYSPVPVPLDFCCPLSLELMKDPVIVSSGQTYERAFIKNWIDLGLDVCPKTRQTLTHTNLIPNYTVKALITNWCELNNVKLRDPIMSLNLNHCSSTSEGSSSDITSRKSFDILRISQSRSDDIMSTSLDEMSVDLVSQDSPYTMESSNAFNSEQSQADLALSNENFPQGNKADSSSSMEVNPKLETTSATVLNAQREPEFSAPSLEARPQVLSIWQHPPGNLRLASSLPAIEIRPSPSGIETQVQNLAKDLKSSSIDTQREATEELRLLAKHNVENRIVIANCGVISPLVDLLQSSDTKVQENAVTALLNLSINDNNKTAIANAGAIDFLIHVLGTGCPEAKENSAATLYSLSMMEENRIRIGRSGAIKPLVDLLANGTSRGKKDASTALFNLSIFHENKGRIVQAGAVKYLVELMDPAAGMADKAVAVLANLASIPEGRTEIVHEGAIPILVDVIELGSTRGKENAAATLLHICSNSSRFLSIMIHEGAIPPLVALSLSGTPRAKEKAQALLNHCRSQRHGSARRG 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2894 643 ProSiteProfiles U-box domain profile. 122 196 IPR003613 GO:0004842|GO:0016567
Prci2g2894 643 SMART Ubox_2 126 189 IPR003613 GO:0004842|GO:0016567
Prci2g2894 643 Gene3D - 352 642 IPR011989 -
Prci2g2894 643 SMART arm_5 389 429 IPR000225 GO:0005515
Prci2g2894 643 SMART arm_5 471 511 IPR000225 GO:0005515
Prci2g2894 643 SMART arm_5 512 551 IPR000225 GO:0005515
Prci2g2894 643 SMART arm_5 430 470 IPR000225 GO:0005515
Prci2g2894 643 SMART arm_5 552 592 IPR000225 GO:0005515
Prci2g2894 643 Pfam Armadillo/beta-catenin-like repeat 473 510 IPR000225 GO:0005515
Prci2g2894 643 Pfam Armadillo/beta-catenin-like repeat 389 428 IPR000225 GO:0005515
Prci2g2894 643 SUPERFAMILY ARM repeat 360 632 IPR016024 -
Prci2g2894 643 CDD RING-Ubox_PUB 124 176 IPR045210 -
Prci2g2894 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Prci2g2894 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 482 524 IPR000225 GO:0005515
Prci2g2894 643 Pfam U-box domain 123 193 IPR003613 GO:0004842|GO:0016567
Prci2g2894 643 FunFam RING-type E3 ubiquitin transferase 344 638 - -
Prci2g2894 643 FunFam RING-type E3 ubiquitin transferase 122 197 - -
Prci2g2894 643 PANTHER U BOX DOMAIN-CONTAINING 39 632 - -
Prci2g2894 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 564 IPR000225 GO:0005515
Prci2g2894 643 SUPERFAMILY RING/U-box 114 199 - -
Prci2g2894 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2894 Prci-Chr2 33984173 33991938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2894 83 643 U-box Gene Family AT2G23140 52.648 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2894 - - pcin:129303726 1242.25