Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2893 ATGGAGATATCGTTGTTAAACGTGATTGTTAATGGCATATCCTCGTTTTCACACTCAAAATCTTCTGGAAACTTGAACTCAAAACCTATCTTGAAGTATCATCAGGAGGCAGAGAAGATCCTTAAACTGTTAAAGCCAATACTTGAAGCCATTATTGATACTGATTTTGGCTCTGATGAAGTTCTTCAGAAGATATTTGAAGAACTGAGTCAGACTCTGGAGGAACTGAGGGAGCTTTTTGGGAGTTGGCAACTATTATGTAGCAAAATTTACAATGTTTTGCAAATTGAATTCTTGATATCTAAGATTCAGATTTTGGCACTCGCCATTTTCAAGCAGATGAAGGCTTCCCATCAATGTCTTGCTAATGAATTCAATTCTGCACAAGTAGAGCACTGTATTGAGAAAATAAAGAATTTGGGGCATGGAGAAACATCTTCTATCATCAAAGAAGCTATCATGGAACAAGTGGAAGGCTTAGGACCTAGTTCAGAGGTCCTTGAAAAAATTATTGAGAATCTAGGCTTAAGTTCTAACCAAGAGGTTCTGATTGAGGCTGTGACACTTGAAAAGTTCAAGGAGAATGCAGAACAGATTGAAAATTTTGCAGAAGCTGAATATCTAAACCAGATTATTACTCTTGCAACTCGAATGCATGAGAGTCTTATAATGCTGAAACAAGCCCAGAGTTATAGCCCAGTTCCAGTACCTCTAGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGAAAGATCCTGTGATTGTGTCATCAGGGCAAACTTATGAGCGAGCTTTTATTAAGAATTGGATCGATCTCGGGCTTGATGTTTGTCCAAAGACACGTCAGACTCTGACTCATACCAACCTAATACCAAACTATACCGTAAAAGCACTGATTACAAATTGGTGTGAGTTGAACAATGTCAAGCTACGTGATCCTATAATGTCCTTAAACTTGAATCATTGTAGTTCAACTTCAGAAGGTTCTTCAAGTGACATCACTAGCAGGAAAAGTTTTGATATTTTAAGAATATCACAATCACGTTCTGATGACATCATGTCTACTAGTTTAGATGAAATGAGTGTGGATTTAGTTAGCCAAGATTCACCATATACAATGGAATCTTCCAATGCCTTCAACTCAGAACAATCTCAAGCTGATCTTGCACTTTCAAATGAAAACTTCCCTCAAGGAAATAAAGCTGATAGTAGTTCTTCTATGGAGGTGAATCCAAAGTTAGAAACCACCAGTGCTACTGTCTTGAATGCTCAGAGAGAACCTGAGTTCTCAGCTCCATCATTAGAGGCAAGGCCTCAAGTCTTAAGTATATGGCAGCATCCACCAGGGAATTTAAGGTTAGCTTCTTCATTACCTGCAATTGAAATTAGACCAAGTCCTTCTGGTATTGAAACCCAAGTTCAGAATTTGGCCAAAGACTTGAAGAGCTCTTCAATTGATACTCAGAGAGAAGCAACAGAAGAACTCCGCCTTCTTGCGAAGCATAATGTGGAGAATCGAATTGTGATTGCAAATTGTGGAGTTATTAGCCCATTAGTGGACTTACTCCAGTCTTCTGATACAAAGGTCCAAGAAAATGCCGTGACGGCACTTCTAAACCTATCAATCAATGATAATAACAAAACTGCAATTGCAAATGCTGGTGCAATCGATTTTCTAATTCATGTTCTTGGAACAGGATGTCCTGAAGCCAAGGAGAATTCAGCAGCAACACTTTATAGCCTATCAATGATGGAAGAAAACAGGATCAGGATTGGTAGATCAGGGGCAATTAAGCCACTGGTTGATTTATTAGCAAATGGAACTTCAAGAGGAAAGAAAGATGCTTCCACTGCTTTGTTTAACCTCTCAATATTTCACGAAAACAAAGGTCGTATCGTGCAAGCTGGCGCTGTGAAGTACCTCGTGGAGCTAATGGATCCGGCAGCTGGAATGGCAGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCATCTATTCCAGAAGGAAGAACTGAAATTGTTCATGAAGGTGCTATTCCTATTCTAGTTGATGTTATTGAATTAGGTTCTACAAGAGGGAAGGAAAATGCAGCAGCTACTTTGCTGCATATTTGCTCAAATAGTAGCAGGTTTTTAAGCATTATGATCCATGAAGGAGCTATCCCACCATTAGTAGCATTGTCACTATCTGGTACTCCAAGGGCTAAAGAAAAAGCTCAAGCTCTGCTTAACCACTGTAGAAGTCAAAGACATGGCAGTGCTAGAAGAGGTTGA 2271 0.3932 MEISLLNVIVNGISSFSHSKSSGNLNSKPILKYHQEAEKILKLLKPILEAIIDTDFGSDEVLQKIFEELSQTLEELRELFGSWQLLCSKIYNVLQIEFLISKIQILALAIFKQMKASHQCLANEFNSAQVEHCIEKIKNLGHGETSSIIKEAIMEQVEGLGPSSEVLEKIIENLGLSSNQEVLIEAVTLEKFKENAEQIENFAEAEYLNQIITLATRMHESLIMLKQAQSYSPVPVPLDFCCPLSLELMKDPVIVSSGQTYERAFIKNWIDLGLDVCPKTRQTLTHTNLIPNYTVKALITNWCELNNVKLRDPIMSLNLNHCSSTSEGSSSDITSRKSFDILRISQSRSDDIMSTSLDEMSVDLVSQDSPYTMESSNAFNSEQSQADLALSNENFPQGNKADSSSSMEVNPKLETTSATVLNAQREPEFSAPSLEARPQVLSIWQHPPGNLRLASSLPAIEIRPSPSGIETQVQNLAKDLKSSSIDTQREATEELRLLAKHNVENRIVIANCGVISPLVDLLQSSDTKVQENAVTALLNLSINDNNKTAIANAGAIDFLIHVLGTGCPEAKENSAATLYSLSMMEENRIRIGRSGAIKPLVDLLANGTSRGKKDASTALFNLSIFHENKGRIVQAGAVKYLVELMDPAAGMADKAVAVLANLASIPEGRTEIVHEGAIPILVDVIELGSTRGKENAAATLLHICSNSSRFLSIMIHEGAIPPLVALSLSGTPRAKEKAQALLNHCRSQRHGSARRG 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2893 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Prci2g2893 756 Pfam Armadillo/beta-catenin-like repeat 502 541 IPR000225 GO:0005515
Prci2g2893 756 Pfam Armadillo/beta-catenin-like repeat 586 623 IPR000225 GO:0005515
Prci2g2893 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 636 677 IPR000225 GO:0005515
Prci2g2893 756 SUPERFAMILY RING/U-box 227 312 - -
Prci2g2893 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Prci2g2893 756 SUPERFAMILY ARM repeat 473 745 IPR016024 -
Prci2g2893 756 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Prci2g2893 756 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Prci2g2893 756 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Prci2g2893 756 CDD RING-Ubox_PUB 237 289 IPR045210 -
Prci2g2893 756 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Prci2g2893 756 PANTHER U BOX DOMAIN-CONTAINING 31 745 - -
Prci2g2893 756 FunFam RING-type E3 ubiquitin transferase 457 751 - -
Prci2g2893 756 Coils Coil 59 79 - -
Prci2g2893 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Prci2g2893 756 SMART arm_5 502 542 IPR000225 GO:0005515
Prci2g2893 756 SMART arm_5 665 705 IPR000225 GO:0005515
Prci2g2893 756 SMART arm_5 584 624 IPR000225 GO:0005515
Prci2g2893 756 SMART arm_5 625 664 IPR000225 GO:0005515
Prci2g2893 756 SMART arm_5 543 583 IPR000225 GO:0005515
Prci2g2893 756 Gene3D - 465 755 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2893 Prci-Chr2 33984143 33991938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2893 1 756 U-box Gene Family AT5G67340 48.370 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2893 - - pcin:129303726 1390.17