Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2892 ATGCAGCCAACACTAAAAACCCAGGATTATTCAGAATTCGCTTCCATCTTCCAAATTTATAATTATCGTCGGAAGCTTACTCTCATTGATCTCGTTGATGCCGTGGTGGCTGCCGCTTGCCGGAATCACTCCCCTCTTTCACTGGAGGCTAGCGCCGGCCGTTGCAATTCCAAGGAAGTAGCGTCCGGCCATTTCAATCGCTTCCTCTTTTCCGTGATAACACTGGTTTTGCAAATTGAATTCTTGATATCTAAGATTCAGATTTTGGCACTCGCCATTTTCAAGCAGATGAAGGCTTCCCATCAATGTCTTGCTAATGAATTCAATTCTGCACAAGTAGAGCACTGTATTGAGAAAATAAAGAATTTGGGGCATGGAGAAACATCTTCTATCATCAAAGAAGCTATCATGGAACAAGTGGAAGGCTTAGGACCTAGTTCAGAGGTCCTTGAAAAAATTATTGAGAATCTAGGCTTAAGTTCTAACCAAGAGGTTCTGATTGAGGCTGTGACACTTGAAAAGTTCAAGGAGAATGCAGAACAGATTGAAAATTTTGCAGAAGCTGAATATCTAAACCAGATTATTACTCTTGCAACTCGAATGCATGAGAGTCTTATAATGCTGAAACAAGCCCAGAGTTATAGCCCAGTTCCAGTACCTCTAGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGAAAGATCCTGTGATTGTGTCATCAGGGCAAACTTATGAGCGAGCTTTTATTAAGAATTGGATCGATCTCGGGCTTGATGTTTGTCCAAAGACACGTCAGACTCTGACTCATACCAACCTAATACCAAACTATACCGTAAAAGCACTGATTACAAATTGGTGTGAGTTGAACAATGTCAAGCTACGTGATCCTATAATGTCCTTAAACTTGAATCATTGTAGTTCAACTTCAGAAGGTTCTTCAAGTGACATCACTAGCAGGAAAAGTTTTGATATTTTAAGAATATCACAATCACGTTCTGATGACATCATGTCTACTAGTTTAGATGAAATGAGTGTGGATTTAGTTAGCCAAGATTCACCATATACAATGGAATCTTCCAATGCCTTCAACTCAGAACAATCTCAAGCTGATCTTGCACTTTCAAATGAAAACTTCCCTCAAGGAAATAAAGCTGATAGTAGTTCTTCTATGGAGGTGAATCCAAAGTTAGAAACCACCAGTGCTACTGTCTTGAATGCTCAGAGAGAACCTGAGTTCTCAGCTCCATCATTAGAGGCAAGGCCTCAAGTCTTAAGTATATGGCAGCATCCACCAGGGAATTTAAGGTTAGCTTCTTCATTACCTGCAATTGAAATTAGACCAAGTCCTTCTGGTATTGAAACCCAAGTTCAGAATTTGGCCAAAGACTTGAAGAGCTCTTCAATTGATACTCAGAGAGAAGCAACAGAAGAACTCCGCCTTCTTGCGAAGCATAATGTGGAGAATCGAATTGTGATTGCAAATTGTGGAGTTATTAGCCCATTAGTGGACTTACTCCAGTCTTCTGATACAAAGGTCCAAGAAAATGCCGTGACGGCACTTCTAAACCTATCAATCAATGATAATAACAAAACTGCAATTGCAAATGCTGGTGCAATCGATTTTCTAATTCATGTTCTTGGAACAGGATGTCCTGAAGCCAAGGAGAATTCAGCAGCAACACTTTATAGCCTATCAATGATGGAAGAAAACAGGATCAGGATTGGTAGATCAGGGGCAATTAAGCCACTGGTTGATTTATTAGCAAATGGAACTTCAAGAGGAAAGAAAGATGCTTCCACTGCTTTGTTTAACCTCTCAATATTTCACGAAAACAAAGGTCGTATCGTGCAAGCTGGCGCTGTGAAGTACCTCGTGGAGCTAATGGATCCGGCAGCTGGAATGGCAGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCATCTATTCCAGAAGGAAGAACTGAAATTGTTCATGAAGGTGCTATTCCTATTCTAGTTGATGTTATTGAATTAGGTTCTACAAGAGGGAAGGAAAATGCAGCAGCTACTTTGCTGCATATTTGCTCAAATAGTAGCAGGTTTTTAAGCATTATGATCCATGAAGGAGCTATCCCACCATTAGTAGCATTGTCACTATCTGGTACTCCAAGGGCTAAAGAAAAAGCTCAAGCTCTGCTTAACCACTGTAGAAGTCAAAGACATGGCAGTGCTAGAAGAGGTTGA 2220 0.4059 MQPTLKTQDYSEFASIFQIYNYRRKLTLIDLVDAVVAAACRNHSPLSLEASAGRCNSKEVASGHFNRFLFSVITLVLQIEFLISKIQILALAIFKQMKASHQCLANEFNSAQVEHCIEKIKNLGHGETSSIIKEAIMEQVEGLGPSSEVLEKIIENLGLSSNQEVLIEAVTLEKFKENAEQIENFAEAEYLNQIITLATRMHESLIMLKQAQSYSPVPVPLDFCCPLSLELMKDPVIVSSGQTYERAFIKNWIDLGLDVCPKTRQTLTHTNLIPNYTVKALITNWCELNNVKLRDPIMSLNLNHCSSTSEGSSSDITSRKSFDILRISQSRSDDIMSTSLDEMSVDLVSQDSPYTMESSNAFNSEQSQADLALSNENFPQGNKADSSSSMEVNPKLETTSATVLNAQREPEFSAPSLEARPQVLSIWQHPPGNLRLASSLPAIEIRPSPSGIETQVQNLAKDLKSSSIDTQREATEELRLLAKHNVENRIVIANCGVISPLVDLLQSSDTKVQENAVTALLNLSINDNNKTAIANAGAIDFLIHVLGTGCPEAKENSAATLYSLSMMEENRIRIGRSGAIKPLVDLLANGTSRGKKDASTALFNLSIFHENKGRIVQAGAVKYLVELMDPAAGMADKAVAVLANLASIPEGRTEIVHEGAIPILVDVIELGSTRGKENAAATLLHICSNSSRFLSIMIHEGAIPPLVALSLSGTPRAKEKAQALLNHCRSQRHGSARRG 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2892 739 SMART Ubox_2 222 285 IPR003613 GO:0004842|GO:0016567
Prci2g2892 739 PANTHER U BOX DOMAIN-CONTAINING 52 728 - -
Prci2g2892 739 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 538 IPR000225 GO:0005515
Prci2g2892 739 FunFam RING-type E3 ubiquitin transferase 218 293 - -
Prci2g2892 739 CDD RING-Ubox_PUB 220 272 IPR045210 -
Prci2g2892 739 Pfam U-box domain 219 289 IPR003613 GO:0004842|GO:0016567
Prci2g2892 739 SUPERFAMILY ARM repeat 456 728 IPR016024 -
Prci2g2892 739 Gene3D - 448 738 IPR011989 -
Prci2g2892 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 293 IPR013083 -
Prci2g2892 739 ProSiteProfiles U-box domain profile. 218 292 IPR003613 GO:0004842|GO:0016567
Prci2g2892 739 SMART arm_5 648 688 IPR000225 GO:0005515
Prci2g2892 739 SMART arm_5 567 607 IPR000225 GO:0005515
Prci2g2892 739 SMART arm_5 608 647 IPR000225 GO:0005515
Prci2g2892 739 SMART arm_5 526 566 IPR000225 GO:0005515
Prci2g2892 739 SMART arm_5 485 525 IPR000225 GO:0005515
Prci2g2892 739 SUPERFAMILY RING/U-box 210 295 - -
Prci2g2892 739 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 619 660 IPR000225 GO:0005515
Prci2g2892 739 FunFam RING-type E3 ubiquitin transferase 440 734 - -
Prci2g2892 739 Pfam Armadillo/beta-catenin-like repeat 485 524 IPR000225 GO:0005515
Prci2g2892 739 Pfam Armadillo/beta-catenin-like repeat 569 606 IPR000225 GO:0005515
Prci2g2892 739 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 578 620 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2892 Prci-Chr2 33984043 33991938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2892 179 739 U-box Gene Family AT2G23140 52.648 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2892 - - pcin:129303726 1343.18