Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2891 ATGCAGCCAACACTAAAAACCCAGGATTATTCAGAATTCGCTTCCATCTTCCAAATTTATAATTATCGTCGGAAGCTTACTCTCATTGATCTCGTTGATGCCGTGGTGGCTGCCGCTTGCCGGAATCACTCCCCTCTTTCACTGGAGGCTAGCGCCGGCCGTTGCAATTCCAAGGAAGTAGCGTCCGGCCATTTCAATCGCTTCCTCTTTTCCGTGATAACACTGGAGGCAGAGAAGATCCTTAAACTGTTAAAGCCAATACTTGAAGCCATTATTGATACTGATTTTGGCTCTGATGAAGTTCTTCAGAAGATATTTGAAGAACTGAGTCAGACTCTGGAGGAACTGAGGGAGCTTTTTGGGAGTTGGCAACTATTATGTAGCAAAATTTACAATGTTTTGCAAATTGAATTCTTGATATCTAAGATTCAGATTTTGGCACTCGCCATTTTCAAGCAGATGAAGGCTTCCCATCAATGTCTTGCTAATGAATTCAATTCTGCACAAGTAGAGCACTGTATTGAGAAAATAAAGAATTTGGGGCATGGAGAAACATCTTCTATCATCAAAGAAGCTATCATGGAACAAGTGGAAGGCTTAGGACCTAGTTCAGAGGTCCTTGAAAAAATTATTGAGAATCTAGGCTTAAGTTCTAACCAAGAGGTTCTGATTGAGGCTGTGACACTTGAAAAGTTCAAGGAGAATGCAGAACAGATTGAAAATTTTGCAGAAGCTGAATATCTAAACCAGATTATTACTCTTGCAACTCGAATGCATGAGAGTCTTATAATGCTGAAACAAGCCCAGAGTTATAGCCCAGTTCCAGTACCTCTAGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGAAAGATCCTGTGATTGTGTCATCAGGGCAAACTTATGAGCGAGCTTTTATTAAGAATTGGATCGATCTCGGGCTTGATGTTTGTCCAAAGACACGTCAGACTCTGACTCATACCAACCTAATACCAAACTATACCGTAAAAGCACTGATTACAAATTGGTGTGAGTTGAACAATGTCAAGCTACGTGATCCTATAATGTCCTTAAACTTGAATCATTGTAGTTCAACTTCAGAAGGTTCTTCAAGTGACATCACTAGCAGGAAAAGTTTTGATATTTTAAGAATATCACAATCACGTTCTGATGACATCATGTCTACTAGTTTAGATGAAATGAGTGTGGATTTAGTTAGCCAAGATTCACCATATACAATGGAATCTTCCAATGCCTTCAACTCAGAACAATCTCAAGCTGATCTTGCACTTTCAAATGAAAACTTCCCTCAAGGAAATAAAGCTGATAGTAGTTCTTCTATGGAGGTGAATCCAAAGTTAGAAACCACCAGTGCTACTGTCTTGAATGCTCAGAGAGAACCTGAGTTCTCAGCTCCATCATTAGAGGCAAGGCCTCAAGTCTTAAGTATATGGCAGCATCCACCAGGGAATTTAAGGTTAGCTTCTTCATTACCTGCAATTGAAATTAGACCAAGTCCTTCTGGTATTGAAACCCAAGTTCAGAATTTGGCCAAAGACTTGAAGAGCTCTTCAATTGATACTCAGAGAGAAGCAACAGAAGAACTCCGCCTTCTTGCGAAGCATAATGTGGAGAATCGAATTGTGATTGCAAATTGTGGAGTTATTAGCCCATTAGTGGACTTACTCCAGTCTTCTGATACAAAGGTCCAAGAAAATGCCGTGACGGCACTTCTAAACCTATCAATCAATGATAATAACAAAACTGCAATTGCAAATGCTGGTGCAATCGATTTTCTAATTCATGTTCTTGGAACAGGATGTCCTGAAGCCAAGGAGAATTCAGCAGCAACACTTTATAGCCTATCAATGATGGAAGAAAACAGGATCAGGATTGGTAGATCAGGGGCAATTAAGCCACTGGTTGATTTATTAGCAAATGGAACTTCAAGAGGAAAGAAAGATGCTTCCACTGCTTTGTTTAACCTCTCAATATTTCACGAAAACAAAGGTCGTATCGTGCAAGCTGGCGCTGTGAAGTACCTCGTGGAGCTAATGGATCCGGCAGCTGGAATGGCAGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCATCTATTCCAGAAGGAAGAACTGAAATTGTTCATGAAGGTGCTATTCCTATTCTAGTTGATGTTATTGAATTAGGTTCTACAAGAGGGAAGGAAAATGCAGCAGCTACTTTGCTGCATATTTGCTCAAATAGTAGCAGGTTTTTAAGCATTATGATCCATGAAGGAGCTATCCCACCATTAGTAGCATTGTCACTATCTGGTACTCCAAGGGCTAAAGAAAAAGCTCAAGCTCTGCTTAACCACTGTAGAAGTCAAAGACATGGCAGTGCTAGAAGAGGTTGA 2391 0.404 MQPTLKTQDYSEFASIFQIYNYRRKLTLIDLVDAVVAAACRNHSPLSLEASAGRCNSKEVASGHFNRFLFSVITLEAEKILKLLKPILEAIIDTDFGSDEVLQKIFEELSQTLEELRELFGSWQLLCSKIYNVLQIEFLISKIQILALAIFKQMKASHQCLANEFNSAQVEHCIEKIKNLGHGETSSIIKEAIMEQVEGLGPSSEVLEKIIENLGLSSNQEVLIEAVTLEKFKENAEQIENFAEAEYLNQIITLATRMHESLIMLKQAQSYSPVPVPLDFCCPLSLELMKDPVIVSSGQTYERAFIKNWIDLGLDVCPKTRQTLTHTNLIPNYTVKALITNWCELNNVKLRDPIMSLNLNHCSSTSEGSSSDITSRKSFDILRISQSRSDDIMSTSLDEMSVDLVSQDSPYTMESSNAFNSEQSQADLALSNENFPQGNKADSSSSMEVNPKLETTSATVLNAQREPEFSAPSLEARPQVLSIWQHPPGNLRLASSLPAIEIRPSPSGIETQVQNLAKDLKSSSIDTQREATEELRLLAKHNVENRIVIANCGVISPLVDLLQSSDTKVQENAVTALLNLSINDNNKTAIANAGAIDFLIHVLGTGCPEAKENSAATLYSLSMMEENRIRIGRSGAIKPLVDLLANGTSRGKKDASTALFNLSIFHENKGRIVQAGAVKYLVELMDPAAGMADKAVAVLANLASIPEGRTEIVHEGAIPILVDVIELGSTRGKENAAATLLHICSNSSRFLSIMIHEGAIPPLVALSLSGTPRAKEKAQALLNHCRSQRHGSARRG 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2891 796 Pfam U-box domain 276 346 IPR003613 GO:0004842|GO:0016567
Prci2g2891 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 350 IPR013083 -
Prci2g2891 796 SMART arm_5 583 623 IPR000225 GO:0005515
Prci2g2891 796 SMART arm_5 705 745 IPR000225 GO:0005515
Prci2g2891 796 SMART arm_5 624 664 IPR000225 GO:0005515
Prci2g2891 796 SMART arm_5 665 704 IPR000225 GO:0005515
Prci2g2891 796 SMART arm_5 542 582 IPR000225 GO:0005515
Prci2g2891 796 SUPERFAMILY ARM repeat 513 785 IPR016024 -
Prci2g2891 796 Gene3D - 505 795 IPR011989 -
Prci2g2891 796 SUPERFAMILY RING/U-box 267 352 - -
Prci2g2891 796 Coils Coil 99 119 - -
Prci2g2891 796 PANTHER U BOX DOMAIN-CONTAINING 80 785 - -
Prci2g2891 796 FunFam RING-type E3 ubiquitin transferase 275 350 - -
Prci2g2891 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 717 IPR000225 GO:0005515
Prci2g2891 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 635 677 IPR000225 GO:0005515
Prci2g2891 796 FunFam RING-type E3 ubiquitin transferase 497 791 - -
Prci2g2891 796 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Prci2g2891 796 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Prci2g2891 796 Pfam Armadillo/beta-catenin-like repeat 542 581 IPR000225 GO:0005515
Prci2g2891 796 Pfam Armadillo/beta-catenin-like repeat 626 663 IPR000225 GO:0005515
Prci2g2891 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 595 IPR000225 GO:0005515
Prci2g2891 796 CDD RING-Ubox_PUB 277 329 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2891 Prci-Chr2 33984043 33991938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2891 77 796 U-box Gene Family AT5G67340 48.837 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2891 - - pcin:129303726 1504.96