Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2890 ATGCAGCCAACACTAAAAACCCAGGATTATTCAGAATTCGCTTCCATCTTCCAAATTTATAATTATCGTCGGAAGCTTACTCTCATTGATCTCGTTGATGCCGTGGTGGCTGCCGCTTGCCGGAATCACTCCCCTCTTTCACTGGAGGCTAGCGCCGGCCGTTGCAATTCCAAGGAAGTAGCGTCCGGCCATTTCAATCGCTTCCTCTTTTCCGTGATAACACTGTATCATCAGGAGGCAGAGAAGATCCTTAAACTGTTAAAGCCAATACTTGAAGCCATTATTGATACTGATTTTGGCTCTGATGAAGTTCTTCAGAAGATATTTGAAGAACTGAGTCAGACTCTGGAGGAACTGAGGGAGCTTTTTGGGAGTTGGCAACTATTATGTAGCAAAATTTACAATGTTTTGCAAATTGAATTCTTGATATCTAAGATTCAGATTTTGGCACTCGCCATTTTCAAGCAGATGAAGGCTTCCCATCAATGTCTTGCTAATGAATTCAATTCTGCACAAGTAGAGCACTGTATTGAGAAAATAAAGAATTTGGGGCATGGAGAAACATCTTCTATCATCAAAGAAGCTATCATGGAACAAGTGGAAGGCTTAGGACCTAGTTCAGAGGTCCTTGAAAAAATTATTGAGAATCTAGGCTTAAGTTCTAACCAAGAGGTTCTGATTGAGGCTGTGACACTTGAAAAGTTCAAGGAGAATGCAGAACAGATTGAAAATTTTGCAGAAGCTGAATATCTAAACCAGATTATTACTCTTGCAACTCGAATGCATGAGAGTCTTATAATGCTGAAACAAGCCCAGAGTTATAGCCCAGTTCCAGTACCTCTAGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGAAAGATCCTGTGATTGTGTCATCAGGGCAAACTTATGAGCGAGCTTTTATTAAGAATTGGATCGATCTCGGGCTTGATGTTTGTCCAAAGACACGTCAGACTCTGACTCATACCAACCTAATACCAAACTATACCGTAAAAGCACTGATTACAAATTGGTGTGAGTTGAACAATGTCAAGCTACGTGATCCTATAATGTCCTTAAACTTGAATCATTGTAGTTCAACTTCAGAAGGTTCTTCAAGTGACATCACTAGCAGGAAAAGTTTTGATATTTTAAGAATATCACAATCACGTTCTGATGACATCATGTCTACTAGTTTAGATGAAATGAGTGTGGATTTAGTTAGCCAAGATTCACCATATACAATGGAATCTTCCAATGCCTTCAACTCAGAACAATCTCAAGCTGATCTTGCACTTTCAAATGAAAACTTCCCTCAAGGAAATAAAGCTGATAGTAGTTCTTCTATGGAGGTGAATCCAAAGTTAGAAACCACCAGTGCTACTGTCTTGAATGCTCAGAGAGAACCTGAGTTCTCAGCTCCATCATTAGAGGCAAGGCCTCAAGTCTTAAGTATATGGCAGCATCCACCAGGGAATTTAAGGTTAGCTTCTTCATTACCTGCAATTGAAATTAGACCAAGTCCTTCTGGTATTGAAACCCAAGTTCAGAATTTGGCCAAAGACTTGAAGAGCTCTTCAATTGATACTCAGAGAGAAGCAACAGAAGAACTCCGCCTTCTTGCGAAGCATAATGTGGAGAATCGAATTGTGATTGCAAATTGTGGAGTTATTAGCCCATTAGTGGACTTACTCCAGTCTTCTGATACAAAGGTCCAAGAAAATGCCGTGACGGCACTTCTAAACCTATCAATCAATGATAATAACAAAACTGCAATTGCAAATGCTGGTGCAATCGATTTTCTAATTCATGTTCTTGGAACAGGATGTCCTGAAGCCAAGGAGAATTCAGCAGCAACACTTTATAGCCTATCAATGATGGAAGAAAACAGGATCAGGATTGGTAGATCAGGGGCAATTAAGCCACTGGTTGATTTATTAGCAAATGGAACTTCAAGAGGAAAGAAAGATGCTTCCACTGCTTTGTTTAACCTCTCAATATTTCACGAAAACAAAGGTCGTATCGTGCAAGCTGGCGCTGTGAAGTACCTCGTGGAGCTAATGGATCCGGCAGCTGGAATGGCAGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCATCTATTCCAGAAGGAAGAACTGAAATTGTTCATGAAGGTGCTATTCCTATTCTAGTTGATGTTATTGAATTAGGTTCTACAAGAGGGAAGGAAAATGCAGCAGCTACTTTGCTGCATATTTGCTCAAATAGTAGCAGGTTTTTAAGCATTATGATCCATGAAGGAGCTATCCCACCATTAGTAGCATTGTCACTATCTGGTACTCCAAGGGCTAAAGAAAAAGCTCAAGCTCTGCTTAACCACTGTAGAAGTCAAAGACATGGCAGTGCTAGAAGAGGTTGA 2400 0.4037 MQPTLKTQDYSEFASIFQIYNYRRKLTLIDLVDAVVAAACRNHSPLSLEASAGRCNSKEVASGHFNRFLFSVITLYHQEAEKILKLLKPILEAIIDTDFGSDEVLQKIFEELSQTLEELRELFGSWQLLCSKIYNVLQIEFLISKIQILALAIFKQMKASHQCLANEFNSAQVEHCIEKIKNLGHGETSSIIKEAIMEQVEGLGPSSEVLEKIIENLGLSSNQEVLIEAVTLEKFKENAEQIENFAEAEYLNQIITLATRMHESLIMLKQAQSYSPVPVPLDFCCPLSLELMKDPVIVSSGQTYERAFIKNWIDLGLDVCPKTRQTLTHTNLIPNYTVKALITNWCELNNVKLRDPIMSLNLNHCSSTSEGSSSDITSRKSFDILRISQSRSDDIMSTSLDEMSVDLVSQDSPYTMESSNAFNSEQSQADLALSNENFPQGNKADSSSSMEVNPKLETTSATVLNAQREPEFSAPSLEARPQVLSIWQHPPGNLRLASSLPAIEIRPSPSGIETQVQNLAKDLKSSSIDTQREATEELRLLAKHNVENRIVIANCGVISPLVDLLQSSDTKVQENAVTALLNLSINDNNKTAIANAGAIDFLIHVLGTGCPEAKENSAATLYSLSMMEENRIRIGRSGAIKPLVDLLANGTSRGKKDASTALFNLSIFHENKGRIVQAGAVKYLVELMDPAAGMADKAVAVLANLASIPEGRTEIVHEGAIPILVDVIELGSTRGKENAAATLLHICSNSSRFLSIMIHEGAIPPLVALSLSGTPRAKEKAQALLNHCRSQRHGSARRG 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2890 799 PANTHER U BOX DOMAIN-CONTAINING 80 788 - -
Prci2g2890 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Prci2g2890 799 FunFam RING-type E3 ubiquitin transferase 500 794 - -
Prci2g2890 799 CDD RING-Ubox_PUB 280 332 IPR045210 -
Prci2g2890 799 SUPERFAMILY RING/U-box 270 355 - -
Prci2g2890 799 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Prci2g2890 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 556 598 IPR000225 GO:0005515
Prci2g2890 799 Gene3D - 508 798 IPR011989 -
Prci2g2890 799 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Prci2g2890 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 679 720 IPR000225 GO:0005515
Prci2g2890 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 638 680 IPR000225 GO:0005515
Prci2g2890 799 FunFam RING-type E3 ubiquitin transferase 278 353 - -
Prci2g2890 799 Coils Coil 102 122 - -
Prci2g2890 799 SUPERFAMILY ARM repeat 516 788 IPR016024 -
Prci2g2890 799 Pfam Armadillo/beta-catenin-like repeat 629 666 IPR000225 GO:0005515
Prci2g2890 799 Pfam Armadillo/beta-catenin-like repeat 545 584 IPR000225 GO:0005515
Prci2g2890 799 SMART arm_5 668 707 IPR000225 GO:0005515
Prci2g2890 799 SMART arm_5 545 585 IPR000225 GO:0005515
Prci2g2890 799 SMART arm_5 586 626 IPR000225 GO:0005515
Prci2g2890 799 SMART arm_5 708 748 IPR000225 GO:0005515
Prci2g2890 799 SMART arm_5 627 667 IPR000225 GO:0005515
Prci2g2890 799 Pfam U-box domain 279 349 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2890 Prci-Chr2 33984043 33991938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2890 76 799 U-box Gene Family AT5G67340 48.707 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2890 - - pcin:129303726 1530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0482 8 3119029 3126546 Prci2g2890 2 33984043 33991938 CCT