Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2867 ATGACATCAGGAAACCGATGCCACTATGAAGTCCTTGGCCTTCAGCGAGACTGTACCCCTGATGAGATACGGTCAGCGTACAGGCGTCTTGCCCTTCAGCGGCACCCTGACAAGCTTGTCAAATCTGGCTTATCACAAGCTGAAGCCACAGCCCAATTCCAGGAGCTCCAACATGCCTATGAAGTTCTTTCTGACCCTAAAGAGCGAGCATGGTATGATTCCCACCGGTCTCAGATTCTCTTTTCTGATCCCAACTCTGTTGGAAACTCGGTCCCCAACTCGTTCATCCCGAATCTGTTTTCCTTCTTCTCTACGAGTGTTTATTCTGGATATTCAGACTCTGGCAAGGGATTCTATAAGGTCTATTCTGATGTATTTGATAAAATTCATGCCAATGAAATTAACTTTGCTAGGAAATTAGGACTGGGTATTGATGTGGTTCGACAAGCCCCAGTAATGGGCAATTCGGATAGCCCTTATGCTCAAGTGACAGCATTTTACAATTACTGGTTGGGATTTTCAACTGTTATGGATTTTTGTTGGGTGGATGAGTTTGATGTTATGGCTGGTCCTAATCGGAAGTCAAGGCGCCTTATGGAGGAAGAGAACAGCAAGATCAGAAAGAAGGCAAAGAAAGAGTACAACGACACTGTGCGGAAGTTGGCTGATTTTGTCAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAAGAATATGGAGATGGAAAAGAAAAAAGAGGAGGAGAGGGAGAGGAAGAAACAGTTGGAGAAGGAGAAAAAGGAGAGAGCAATGGCATATGAAGAGCCAGAGTGGGCCAAAGTGGAGGAGGATGAAGAAGATGAGGCTGACTGGTTTGAGGAGGGGACTAAGAAGAAGAACGCTGAGAATGAGTTTTATTGTGTACTTTGTGGTAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAATCAAAGAAGCATAAGGAGAAAGTTGCTGAATTTAGGGATTCACTTGATGATGAAGAGGATGTGGAAGTAGAAGTGGGAGAAAGAGGAGGAAAGATGAGCTCAGAAAGTTATGAAGACAGAATTGGGGTGAATGATGATATATCTGGGAGCACAGATAATGAGATTGATGATTTGGAGGGGAGAATTAAAGATGGTCTTAATGTTGCAGAGGGCGTGACAAGAAATGGGGTTGAGTTGAATGAAGAGGAGGAGGAGGAGGAGGAAGATGAAGACGAATTTCTTGATGCGCAGCATCAAGTAGGGGAGGAGGCTGGTGTCTCAATGGATTTTGATGAAGAAGAGGATGATGAATTGGGTGTCCTTGAAGCAATGCTGGCTGGGCAAAGGAGCAGAAATACAGGTGCCCCAAGGCAGGAGTGCAAGGCTTCAGTGAGATCTCCAAATGATTTTATGAAATATGACACCAGAAAAAATTCAAGAAAGAAACGTGAAGCCAAGAAAGAGAAAGGAAGAGAACTTAGCGAAGATTTTAAGGTAACTACTAGTAATAGTGATTTTCATAATGAAAAAAATATTGACGTTGATGCATCTCAGGCAGAAGATTTCTCTCCATACAATGTGGAAAACGAGAGTAATAGTAAAGAAAACGGACAGGTCAGTATAGACAAGAAGGCTTCAAATCCACGCATTGATAAAAAAGGAGCTGCGAAGGATAAGATATCCCATGGAAAAAATTCATCCAAAACAGGAAAAGCCAAGGGGACGTCAAAGAATCTGGTCAATATCTGTGAGGCTTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTGCATAAACATCTGGGAGAAACAGGGCATGCGACTATAAAATCCCCCGCGAGGAAACATCACTAG 1851 0.4322 MTSGNRCHYEVLGLQRDCTPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGNSVPNSFIPNLFSFFSTSVYSGYSDSGKGFYKVYSDVFDKIHANEINFARKLGLGIDVVRQAPVMGNSDSPYAQVTAFYNYWLGFSTVMDFCWVDEFDVMAGPNRKSRRLMEEENSKIRKKAKKEYNDTVRKLADFVKKRDKRVIDMKVKKNMEMEKKKEEERERKKQLEKEKKERAMAYEEPEWAKVEEDEEDEADWFEEGTKKKNAENEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDEEDVEVEVGERGGKMSSESYEDRIGVNDDISGSTDNEIDDLEGRIKDGLNVAEGVTRNGVELNEEEEEEEEDEDEFLDAQHQVGEEAGVSMDFDEEEDDELGVLEAMLAGQRSRNTGAPRQECKASVRSPNDFMKYDTRKNSRKKREAKKEKGRELSEDFKVTTSNSDFHNEKNIDVDASQAEDFSPYNVENESNSKENGQVSIDKKASNPRIDKKGAAKDKISHGKNSSKTGKAKGTSKNLVNICEACGEEFESRNKLHKHLGETGHATIKSPARKHH 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2867 616 MobiDBLite consensus disorder prediction 315 334 - -
Prci2g2867 616 SUPERFAMILY beta-beta-alpha zinc fingers 294 342 IPR036236 -
Prci2g2867 616 Gene3D DnaJ domain 1 87 IPR036869 -
Prci2g2867 616 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Prci2g2867 616 MobiDBLite consensus disorder prediction 399 415 - -
Prci2g2867 616 Coils Coil 399 419 - -
Prci2g2867 616 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Prci2g2867 616 ProSiteProfiles Zinc finger C2H2 type domain profile. 581 610 IPR013087 -
Prci2g2867 616 PRINTS DnaJ domain signature 48 68 IPR001623 -
Prci2g2867 616 PRINTS DnaJ domain signature 27 42 IPR001623 -
Prci2g2867 616 PRINTS DnaJ domain signature 9 27 IPR001623 -
Prci2g2867 616 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Prci2g2867 616 MobiDBLite consensus disorder prediction 522 543 - -
Prci2g2867 616 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Prci2g2867 616 SUPERFAMILY Chaperone J-domain 4 95 IPR036869 -
Prci2g2867 616 MobiDBLite consensus disorder prediction 446 578 - -
Prci2g2867 616 ProSitePatterns Zinc finger C2H2 type domain signature. 583 605 IPR013087 -
Prci2g2867 616 SMART c2h2final6 300 324 IPR013087 -
Prci2g2867 616 SMART c2h2final6 581 605 IPR013087 -
Prci2g2867 616 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Prci2g2867 616 Coils Coil 233 267 - -
Prci2g2867 616 MobiDBLite consensus disorder prediction 545 565 - -
Prci2g2867 616 MobiDBLite consensus disorder prediction 392 415 - -
Prci2g2867 616 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Prci2g2867 616 SMART dnaj_3 6 68 IPR001623 -
Prci2g2867 616 CDD DnaJ 7 65 IPR001623 -
Prci2g2867 616 Gene3D Classic Zinc Finger 288 348 - -
Prci2g2867 616 MobiDBLite consensus disorder prediction 344 362 - -
Prci2g2867 616 MobiDBLite consensus disorder prediction 242 265 - -
Prci2g2867 616 MobiDBLite consensus disorder prediction 597 616 - -
Prci2g2867 616 MobiDBLite consensus disorder prediction 315 376 - -
Prci2g2867 616 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 3 610 IPR044648 -
Prci2g2867 616 Pfam DnaJ domain 8 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2867 Prci-Chr2 33123429 33126865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2867 6 610 C2H2 Transcription Factor Family AT1G74250 50.457 3.27e-180 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci2g2867 DnaJ 6.6e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2867 K09506 - gmx:100788305 711.064