Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2866 ATGACATCAGGAAACCGATGCCACTATGAAGTCCTTGGCCTTCAGCGAGACTGTACCCCTGATGAGATACGGTCAGCGTACAGGCGTCTTGCCCTTCAGCGGCACCCTGACAAGCTTGTCAAATCTGGCTTATCACAAGCTGAAGCCACAGCCCAATTCCAGGAGCTCCAACATGCCTATGAAGTTCTTTCTGACCCTAAAGAGCGAGCATGGTATGATTCCCACCGGTCTCAGATTCTCTTTTCTGATCCCAACTCTGTTGGAAACTCGGTCCCCAACTCGTTCATCCCGAATCTGTTTTCCTTCTTCTCTACGAGTGTTTATTCTGGATATTCAGACTCTGGCAAGGGATTCTATAAGGTCTATTCTGATGTATTTGATAAAATTCATGCCAATGAAATTAACTTTGCTAGGAAATTAGGACTGGGTATTGATGTGGTTCGACAAGCCCCAGTAATGGGCAATTCGGATAGCCCTTATGCTCAAGTGACAGCATTTTACAATTACTGGTTGGGATTTTCAACTGTTATGGATTTTTGTTGGGTGGATGAGTTTGATGTTATGGCTGGTCCTAATCGGAAGTCAAGGCGCCTTATGGAGGAAGAGAACAGCAAGATCAGAAAGAAGGCAAAGAAAGAGTACAACGACACTGTGCGGAAGTTGGCTGATTTTGTCAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAAGAATATGGAGATGGAAAAGAAAAAAGAGGAGGAGAGGGAGAGGAAGAAACAGTTGGAGAAGGAGAAAAAGGAGAGAGCAATGGCATATGAAGAGCCAGAGTGGGCCAAAGTGGAGGAGGATGAAGAAGATGAGGCTGACTGGTTTGAGGAGGGGACTAAGAAGAAGAACGCTGAGAATGAGTTTTATTGTGTACTTTGTGGTAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAATCAAAGAAGCATAAGGAGAAAGTTGCTGAATTTAGGGATTCACTTGATGATGAAGAGGATGTGGAAGTAGAAGTGGGAGAAAGAGGAGGAAAGATGAGCTCAGAAAGTTATGAAGACAGAATTGGGGTGAATGATGATATATCTGGGAGCACAGATAATGAGATTGATGATTTGGAGGGGAGAATTAAAGATGGTCTTAATGTTGCAGAGGGCGTGACAAGAAATGGGGTTGAGTTGAATGAAGAGGAGGAGGAGGAGGAGGAAGATGAAGACGAATTTCTTGATGCGCAGCATCAAGTAGGGGAGGAGGCTGGTGTCTCAATGGATTTTGATGAAGAAGAGGATGATGAATTGGGTGTCCTTGAAGCAATGCTGGCTGGGCAAAGGAGCAGAAATACAGGTGCCCCAAGGCAGGAGTGCAAGGCTTCAGTGAGATCTCCAAATGATTTTATGAAATATGACACCAGAAAAAATTCAAGAAAGAAACGTGAAGCCAAGAAAGAGAAAGGAAGAGAACTTAGCGAAGATTTTAAGGCAGAAGATTTCTCTCCATACAATGTGGAAAACGAGAGTAATAGTAAAGAAAACGGACAGGTCAGTATAGACAAGAAGGCTTCAAATCCACGCATTGATAAAAAAGGAGCTGCGAAGGATAAGATATCCCATGGAAAAAATTCATCCAAAACAGGAAAAGCCAAGGGGACGTCAAAGAATCTGGTCAATATCTGTGAGGCTTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTGCATAAACATCTGGGAGAAACAGGGCATGCGACTATAAAATCCCCCGCGAGGAAACATCACTAG 1791 0.4372 MTSGNRCHYEVLGLQRDCTPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGNSVPNSFIPNLFSFFSTSVYSGYSDSGKGFYKVYSDVFDKIHANEINFARKLGLGIDVVRQAPVMGNSDSPYAQVTAFYNYWLGFSTVMDFCWVDEFDVMAGPNRKSRRLMEEENSKIRKKAKKEYNDTVRKLADFVKKRDKRVIDMKVKKNMEMEKKKEEERERKKQLEKEKKERAMAYEEPEWAKVEEDEEDEADWFEEGTKKKNAENEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDEEDVEVEVGERGGKMSSESYEDRIGVNDDISGSTDNEIDDLEGRIKDGLNVAEGVTRNGVELNEEEEEEEEDEDEFLDAQHQVGEEAGVSMDFDEEEDDELGVLEAMLAGQRSRNTGAPRQECKASVRSPNDFMKYDTRKNSRKKREAKKEKGRELSEDFKAEDFSPYNVENESNSKENGQVSIDKKASNPRIDKKGAAKDKISHGKNSSKTGKAKGTSKNLVNICEACGEEFESRNKLHKHLGETGHATIKSPARKHH 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2866 596 MobiDBLite consensus disorder prediction 315 334 - -
Prci2g2866 596 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Prci2g2866 596 Coils Coil 399 419 - -
Prci2g2866 596 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Prci2g2866 596 MobiDBLite consensus disorder prediction 525 545 - -
Prci2g2866 596 MobiDBLite consensus disorder prediction 505 523 - -
Prci2g2866 596 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Prci2g2866 596 ProSitePatterns Zinc finger C2H2 type domain signature. 563 585 IPR013087 -
Prci2g2866 596 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Prci2g2866 596 ProSiteProfiles Zinc finger C2H2 type domain profile. 561 590 IPR013087 -
Prci2g2866 596 MobiDBLite consensus disorder prediction 577 596 - -
Prci2g2866 596 MobiDBLite consensus disorder prediction 392 555 - -
Prci2g2866 596 MobiDBLite consensus disorder prediction 399 416 - -
Prci2g2866 596 Coils Coil 233 267 - -
Prci2g2866 596 Gene3D Classic Zinc Finger 288 348 - -
Prci2g2866 596 SUPERFAMILY Chaperone J-domain 4 95 IPR036869 -
Prci2g2866 596 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Prci2g2866 596 SMART c2h2final6 300 324 IPR013087 -
Prci2g2866 596 SMART c2h2final6 561 585 IPR013087 -
Prci2g2866 596 Pfam DnaJ domain 8 73 IPR001623 -
Prci2g2866 596 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Prci2g2866 596 SMART dnaj_3 6 68 IPR001623 -
Prci2g2866 596 MobiDBLite consensus disorder prediction 485 503 - -
Prci2g2866 596 CDD DnaJ 7 65 IPR001623 -
Prci2g2866 596 MobiDBLite consensus disorder prediction 344 362 - -
Prci2g2866 596 MobiDBLite consensus disorder prediction 242 265 - -
Prci2g2866 596 PRINTS DnaJ domain signature 27 42 IPR001623 -
Prci2g2866 596 PRINTS DnaJ domain signature 9 27 IPR001623 -
Prci2g2866 596 PRINTS DnaJ domain signature 48 68 IPR001623 -
Prci2g2866 596 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 3 590 IPR044648 -
Prci2g2866 596 Gene3D DnaJ domain 1 87 IPR036869 -
Prci2g2866 596 MobiDBLite consensus disorder prediction 426 440 - -
Prci2g2866 596 SUPERFAMILY beta-beta-alpha zinc fingers 294 342 IPR036236 -
Prci2g2866 596 MobiDBLite consensus disorder prediction 315 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2866 Prci-Chr2 33123429 33126865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2866 6 590 C2H2 Transcription Factor Family AT1G74250 50.076 9.71e-180 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci2g2866 DnaJ 6.3e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2866 K09506 - gmx:100788305 694.886