LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g2849	ATGGCGCATAGGTTGCTGAGGGACCATGAAGCAGATGGCTGGGAGCGATCTGACTTTCCTATTATCTGTGAATCATGCCTGGGTGACAACCCATATGTTCGTATGACTCGAGCTGGCTTGGATTACGAATCCTCATATGGAAAAGTACGCCCAAATGATACTATTTTGAAACTTCAAAGGACAACACCATACTACAAAAGAAACCGTGCTCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAATGCCCTTATAGGCATGAGATGCCAGTGACTGGGGAGTTGTCACAACAAAATATCAAAGATCGTTATTATGGGGTGAACGATCCTGTGGCGTTGAAGTTACTTGGCAAGGCTGGAGAGATGACCTCTCTGGAGCCTCCAGAGGATGAGACCATTAAAACTCTCTATGTTGGTGGGCTTGATGCTAGGGTTAGTGAGCAGGATCTGCGTGATCACTTTTACGCCCATGGTGAAATAGAATCCATCAAGATGGTGCTCCAACGGGCTTGTGCTTTTGTAACCTACTCAACCAGAGAAGGTGCAGAAAAAGCAGCTGAAGAGCTCTCCAACAAGCTAGTTATCAAAGGCCTAAGGTTGAAGCTAATGTGGGGCAGACCTCAGACATCGAAACCAGACTCCGAAAGTTCCGATCAAGCGAGGCAGCAGGCATCTGTGGCTCATAGCAGGTTGTTGCCTCGAGCTGTCATATCACAGCAGCAGAACCAGGATCAAACCCTGGGGGTGCATTACTATAACATTCCACCTCCTCCTCAGCAAGATAGAAGCTACTATCCATCAATGGATCCTCAAAGAATGGGTGCTGTTATTCCATCCCAAGATGCTGGTCCTCCTGTTGGGGCCTCTGGGACAGGAGAGAACAACAAACCCAACATGGAGAAGCAGCAAATGCAGCATTTTGCCCATCCAATGATGCCTCCACCACCTGGGCAATATCACCATCATCAGTATTATCAGCCTCCACCGTACAGTTATATGCCACCTGTACCTGCTTATCAACAGTACCCACCACCTTACAACCCTGGGATGGCTACATCTCAGCCACCACCAGCGGTAAATCAGCCGTATCAGCAATCTATGCAGCCAGGATCATCTGCTCCCTCAGCATCTGCACCAGCTGCACTGGCAGAAGCAGGAACATCAACCTCGGCCTCACAGTAG	1194	0.4866	MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDETIKTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYSTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPDSESSDQARQQASVAHSRLLPRAVISQQQNQDQTLGVHYYNIPPPPQQDRSYYPSMDPQRMGAVIPSQDAGPPVGASGTGENNKPNMEKQQMQHFAHPMMPPPPGQYHHHQYYQPPPYSYMPPVPAYQQYPPPYNPGMATSQPPPAVNQPYQQSMQPGSSAPSASAPAALAEAGTSTSASQ	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g2849	397	FunFam	Zinc finger CCCH domain-containing protein 4	59	118	-	-
	Prci2g2849	397	SMART	rrm1_1	139	207	IPR000504	GO:0003723
	Prci2g2849	397	MobiDBLite	consensus disorder prediction	345	397	-	-
	Prci2g2849	397	Pfam	Torus domain	56	104	IPR032297	-
	Prci2g2849	397	FunFam	Zinc finger CCCH domain-containing protein 40	123	219	-	-
	Prci2g2849	397	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	1	39	IPR039171	GO:0003723
	Prci2g2849	397	SMART	c3hfinal6	67	93	IPR000571	GO:0046872
	Prci2g2849	397	MobiDBLite	consensus disorder prediction	357	379	-	-
	Prci2g2849	397	SUPERFAMILY	RNA-binding domain, RBD	131	218	IPR035979	GO:0003676
	Prci2g2849	397	CDD	RRM_RBM22	137	210	-	-
	Prci2g2849	397	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	138	211	IPR000504	GO:0003723
	Prci2g2849	397	Gene3D	-	123	221	IPR012677	-
	Prci2g2849	397	MobiDBLite	consensus disorder prediction	282	302	-	-
	Prci2g2849	397	SUPERFAMILY	CCCH zinc finger	69	92	IPR036855	GO:0046872
	Prci2g2849	397	MobiDBLite	consensus disorder prediction	209	231	-	-
	Prci2g2849	397	MobiDBLite	consensus disorder prediction	213	230	-	-
	Prci2g2849	397	Gene3D	-	59	122	-	-
	Prci2g2849	397	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	140	198	IPR000504	GO:0003723
	Prci2g2849	397	ProSiteProfiles	Zinc finger C3H1-type profile.	67	94	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g2849	Prci-Chr2	32683686	32690640	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g2849	139	199	Eukaryotic Initiation Factors Gene Family	AT1G49760	36.364	1.42e-06	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g2849	K12872		-	gmx:100779917	517.309