Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci2g2597 | ATGGCTTCTTCGGATGATGAGGCCGAAGTTCCTCCGCAAGCTGTGTCCAATTACCATTTTGAAGATGACGAGAAAGTGCCCGTTTCATTTTCTGTTTTGCCAATTCAATGGAGTGAATCTGAGTATACAGATGGCGAAAGTGGGCAAGTGTTCCTTGACGGTTTTGCAGATAATGGGCTGCAGAAAGTATTTATGCAAGTCGTTGCATGGAAGTTTGATATTTCCAGTATAAAACCTGAGATATCAGTGCTATCAAAGAATGGTAGACAATGGGTCAAACTTGAGAAGCCAAAGAAGTGGTTTGAGGATAACATAAGGACGATTTTAATTGCTATTCACTTCCTACATTATGTGCAGAAAAATCCTGAAACATCTGCGAAATCTGTGTGGGGCTACTTGTCTAAGGTTTTGAGTTGTTATGAAGTTAGGCCTTCACAAAACGATTTGGTGAACCACTTACAAGTAATTCGTGAAGCTGTTAAAAGGAATGCCATCTTGGCTAAGTCCAAGCTTTTACTCATGGTTCTTGAGAAGCCAGGGAATGTCAAAGTGCTTGATGAGGAAGCTAATAATTTAGCAAGGCCTGCATTTATAGTGGATGATGACATAATTGATGAGGCCGCAGAAGAGTCGGATGAGGATGATGATTTGTTTGATTCTGTTTGTGTATTTTGTGACAATGGTGGTGAATTGCTGTGTTGTGACGGAATATGCATGAGGTTATTCCATGCGACAGAGGAGGATGGTGCAGAATCCTTTTGTGACTCTCTTGGTCTTACTCAGAAGGAAGTTGATGAGATCCAGAGTTTTAAATGCAAAAATTGTGAATATAACCAGCACCAGTGCTTTGTATGTGGCAAGTTAGGTTACTATGATAAATCCTCGCGTGCTGAGGTTTTTAAATGTGATGTTGCAACTTGTGGCCGCTTTTACCATCTGCACTGTGTTGCTAAAGAACTTGGGAAAAATATTGCCGATGGAGAAAGTTTTATTTGTCCTATTCATTCATGCTGTGTCTGTAAGGAAAGAGAAAATAAGAAGAAACATGAATTGCAATTTGCTGTTTGTAGGCGTTGTCCTAAAGCATATCATCGCAAATGTTTGCCAAGGGAGATTGCTCTTGAAGACAATGAAGAAGATGATATTCTGACAAGGGCTTGGGAAGGTCTATTACCAAATAACCGCATACTTATATATTGTTTAAAACATGAGATTGATGAGGAACTTGGAACACCAATGAGAGATCATATCAAATTTCCTGAGATTAAATGTCCTGTTGAGGAAATTGATTCTTCCTTAGAGGCAAAGACAAAGCTTTCAACACGAGATAGAGTTCTGTCAGACAAAAATAATGTTGATCGAGATGATTCTAATTGCAAACGTACTAATCGTAAAGTCTCTAAACTGACTGAGAAATCATCTTCTGGGAAAGCTAGTTTAAAGAAAGAGTCCAAACAGATCATTTCTGGATCAAATGTCTCAAGGAAACGAAAAGCAAATGATGCACCAAAGAGGCACCTGAATGAAAAAAAGAAGTCAATCCCAAAGGAAAGCAAAAACCTTGATGGCAAGGAGAGTCAATCTTCATTTGGCCTAAGATTGTTTGATGCTTACATGACCGAGAGTTCCAAGAAAATTGAACCTAGGGAGCATGAGGCTAATGGAGCTAATAAGTCCCTTCCTGTGAAGTGTACTAAGAAGGAGCTGAGCAATACATTGACTCAACTAGACTCTGATTCAGAGAGGAGATTGTTGGATTTGTTCAAAGAAGCAACATCATCAATCTCCTTGGATGATGTGTTAAGAAAGCACAAATTTGCATCTAGTCAAACTCATCCCTTACGAACTTATGTGGAGAAGACCATTACTGCTGGGAAGTTGGAGGGCTCAGTTGATGCTGTTCGAACAGCTCTAAAGAGGCTAGATGAAGGGAAAAGTATTGAGGATTCAAAATCTGTTTGTGATCCTGATATATTGACCCAGATATTTAAATGGAGGGACAAGTTGAGAGTTTATCTTGCACCTGTTTTGAATGGTAATCGGTACACATCTCATGGCCGCCATTTTACGAAAGTAGAAAAACTTGAAGGGGTTATCGATAGGCTCCATTGGTATGTCCAAAATGGTGATACGATCGTGGACTTCTGTTGTGGTGCTAATGATTTTAGCATCCTGATGAAGAAAAAACTTGAAGAGACTGGGAAGAAATGCTTTTACAAAAACTATGATTTACTTCCAACAAAGAATGATTTTAATTTTGAAATGAGGAACTGGATGTCTGTCAAAGTGAAGGAGCTGCCTAAGGGTTCACAATTGATTATGGGCCTCAATCCCCCCTTTGGTGTTAATGCGAATTTGGCTAACAAGTTTATCGATAAGGCTCTTGAGTTTCAGCCAAAGCTGCTTATTCTTATTGTTCCACCGGAGACAGAGAGGTTAGATAATAAGCGAACCCCTTATGATCTTGTTTGGGAGGATGCTGACTTTCTGTCAGGCAAGTCATTTTATCTGCCTGGATCACTTGATGTTAATGACAGACAAATGGATCAATGGAACGTGAAGGCACCTGTACTGTATCTTTGGAGTCGTCATGACTGGATTGATAAACACAAGGCGATAGCCCAGGAGCATGGTCATGTGCCCAGCCAACGTGATGTACTGATAGAAAAGAGGTTTGATGGAATTTCACCTGCAGATCGTACTGTGGATGGTAATCATGGCAACAATCTCACGTTGGATCTTGACCTTCCAAAGCTAGACAATGATCCTGATGGTGGTCGGGCTTCAAGGAACGGGGGTCTAGAAGAAAATTCATCTCATGGTAATCTTGCCAATGGGAATCATGTGGTACAAGAGCATAGCATAAGCAAAAGCAATTCCGGGAAGAGCATAATCAATTCTGACAAGACATCACAGAAGAATCGTGCTGATGAGAATGCTGGTAGAGGATGTGATGTAGCTTCACCAGCCAACAAACAGCCGGTAAATGATACTTATGACAAAGTGATGCAACACAGGGTATTCAATGGCAGACCAGCAGAGGAAGATTTTCGATCTACTTCAGTGTCTCCACATGAGTTCAATAGTAATGCATACGAGAATTACGAGTCCACCTCTCGCTCACATGTGACGTATGGTAGAGCCGATCATGGGACTGAAAATCAAAATCGGCCGAGTTCTGCTCGTTCTCGTTCTAATTATGGAGCTAGAAATTTTGAGGAACATCATAATAGCCCTCTGGTAGACAGCCCCAGTAGCTTCGAATATAGACCCCATCTCAGGGATGAACAGCATTGGAGGCAAGCAGATATTAGGCAACAAATTCGCGTGTATGGGATTCAGGAACCAGATTATTTGAGAAGTAGGTATCAATCTGGTGATGATCATGCTTTTGGCCCCTTGGGGACTAGCTATAGTCAACTTAGTTCCGATCATAGGTCATCCTACATGAGTACATCAGCAATGCAACGATATGCACCTCGCCTGGATGAATCAAACCATGTCAGGACAAGGACTTTAGGGTTAGAACAATCAATAATTGGTAGAAATAGCAACTTTGATCCTCGTGTGCTGCCACCACATGGATATGGAGGGCCACCACCACAACCTGGATATGGAAGCCCGCTGCTGCCACATGGATATGGAGGCCCACCACCACAGCCTGGATATGGAAGCCCACCGCGACAACCTGGATATGGAGTTCCACCACCACAACCTGGATATGGAGGTACTCCGATGGGTTTTGTGCCTCCTCGCAATGCATATTCCCACTATCACTCGGCTGGGTGGCTCAATGAGTAG | 3801 | 0.4183 | MASSDDEAEVPPQAVSNYHFEDDEKVPVSFSVLPIQWSESEYTDGESGQVFLDGFADNGLQKVFMQVVAWKFDISSIKPEISVLSKNGRQWVKLEKPKKWFEDNIRTILIAIHFLHYVQKNPETSAKSVWGYLSKVLSCYEVRPSQNDLVNHLQVIREAVKRNAILAKSKLLLMVLEKPGNVKVLDEEANNLARPAFIVDDDIIDEAAEESDEDDDLFDSVCVFCDNGGELLCCDGICMRLFHATEEDGAESFCDSLGLTQKEVDEIQSFKCKNCEYNQHQCFVCGKLGYYDKSSRAEVFKCDVATCGRFYHLHCVAKELGKNIADGESFICPIHSCCVCKERENKKKHELQFAVCRRCPKAYHRKCLPREIALEDNEEDDILTRAWEGLLPNNRILIYCLKHEIDEELGTPMRDHIKFPEIKCPVEEIDSSLEAKTKLSTRDRVLSDKNNVDRDDSNCKRTNRKVSKLTEKSSSGKASLKKESKQIISGSNVSRKRKANDAPKRHLNEKKKSIPKESKNLDGKESQSSFGLRLFDAYMTESSKKIEPREHEANGANKSLPVKCTKKELSNTLTQLDSDSERRLLDLFKEATSSISLDDVLRKHKFASSQTHPLRTYVEKTITAGKLEGSVDAVRTALKRLDEGKSIEDSKSVCDPDILTQIFKWRDKLRVYLAPVLNGNRYTSHGRHFTKVEKLEGVIDRLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKKCFYKNYDLLPTKNDFNFEMRNWMSVKVKELPKGSQLIMGLNPPFGVNANLANKFIDKALEFQPKLLILIVPPETERLDNKRTPYDLVWEDADFLSGKSFYLPGSLDVNDRQMDQWNVKAPVLYLWSRHDWIDKHKAIAQEHGHVPSQRDVLIEKRFDGISPADRTVDGNHGNNLTLDLDLPKLDNDPDGGRASRNGGLEENSSHGNLANGNHVVQEHSISKSNSGKSIINSDKTSQKNRADENAGRGCDVASPANKQPVNDTYDKVMQHRVFNGRPAEEDFRSTSVSPHEFNSNAYENYESTSRSHVTYGRADHGTENQNRPSSARSRSNYGARNFEEHHNSPLVDSPSSFEYRPHLRDEQHWRQADIRQQIRVYGIQEPDYLRSRYQSGDDHAFGPLGTSYSQLSSDHRSSYMSTSAMQRYAPRLDESNHVRTRTLGLEQSIIGRNSNFDPRVLPPHGYGGPPPQPGYGSPLLPHGYGGPPPQPGYGSPPRQPGYGVPPPQPGYGGTPMGFVPPRNAYSHYHSAGWLNE | 1266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci2g2597 | 1266 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 277 | IPR013083 | - | |
| Prci2g2597 | 1266 | CDD | PHD2_NSD | 281 | 335 | - | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 446 | 479 | - | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 1011 | 1065 | - | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 480 | 496 | - | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 1175 | 1252 | - | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 932 | 970 | - | - | |
| Prci2g2597 | 1266 | Pfam | Cytosine specific DNA methyltransferase replication foci domain | 11 | 137 | IPR022702 | - | |
| Prci2g2597 | 1266 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 358 | IPR013083 | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 446 | 527 | - | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 898 | 999 | - | - | |
| Prci2g2597 | 1266 | PANTHER | PHD FINGER-CONTAINING PROTEIN DDB_G0268158 | 5 | 884 | - | - | |
| Prci2g2597 | 1266 | SMART | PHD_3 | 337 | 404 | IPR001965 | - | |
| Prci2g2597 | 1266 | SMART | PHD_3 | 281 | 336 | IPR001965 | - | |
| Prci2g2597 | 1266 | SMART | PHD_3 | 221 | 276 | IPR001965 | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 502 | 523 | - | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 1193 | 1244 | - | - | |
| Prci2g2597 | 1266 | CDD | PHD3_NSD | 336 | 369 | - | - | |
| Prci2g2597 | 1266 | MobiDBLite | consensus disorder prediction | 1022 | 1065 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci2g2597 | Prci-Chr2 | 23186113 | 23225946 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci2g2597 | 210 | 316 | PHD Transcription Factor Family | AT3G14980 | 32.710 | 9.73e-06 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci2g2597 | - | - | pcin:129304193 | 2425.59 |