Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2546 ATGCAGCTCGCGACTTCTACTGTGATTTCCATGGCCTTGAAAACGGCGGTGGAGCTCGGCATCTTCGACTTCATTCACAGAGCTGGTCCCTGCGCTGAGATCTCTGCAGCCGAGATCGCGTCGGAGCTTTCTTGCAAGAACCCAGAAGCACTCGATCGACTCCTCCATCTTCTAGTGTCTCACTCCGTTCTTTGTTGTTCCGTTATCGTCGACGAGACTGGAGGGTCGAGATGTTTCAGGCGGCTGTACAGCCTCTCTCCGGTGGCCAAATTCTTTGTTCGAAATGCGGATGGTGCATCGTTAGGCCCCTTCGTTGAATTGGTTCAGGATAAGGTCTTCCTGGATAGCTGGTCAGTCCCAACTGAAGATGCGATATTGGATGGGTGTATTTCATTCAATAGGGTGCATGGGTCACATCTTTTTGAGTATCTAAGAATGGACTCCAGATTCAACCATTTGTTTGACAAAGCGATGATGAATCATAGTACTATAGTTATGAACAAGATTCTTGAATCCTATCGAGGTTTTGGGGACATCACTAGACTCGTCGACGTTGGCGGAGGTGTTGGGATTACTCTCAAGTTGATCACATCCAAATATCCACATATTCAAGGAATCAATTTCGACTTGCCTCATGTCATTCAACATGCCCCTCCTTGTCCTGGAGTGGAACACGTGGAAGGAGATATGTTTGAAACCGTGCCCAGAGGAGATGCCATCTTCATAAAGTGGATACTTCATGATTGGAGCGATGAATGGTGCTTGAAGCTGTTGAAGAATTGCCATGACGCCATTCCTAAAGATGGAAAGGTGATTGTGGTGGAGGCAGTTTTACCAGTTGGATCAGAAACTTCTGCTGCAGCAAAAGGCATCACCCAATTTGATGTGATGATGTTGACTTATTGCCCAGGTGGCAAGGAGAGAACCGAGCATGAGTTCATGAAATTAGCCACATCAGCTGGGTTTACAGGCGTTAGATTTGACTGCTTTGTTCGCAACTTTTGGATTATGGAGTTCTTCAAGTAG 1026 0.4669 MQLATSTVISMALKTAVELGIFDFIHRAGPCAEISAAEIASELSCKNPEALDRLLHLLVSHSVLCCSVIVDETGGSRCFRRLYSLSPVAKFFVRNADGASLGPFVELVQDKVFLDSWSVPTEDAILDGCISFNRVHGSHLFEYLRMDSRFNHLFDKAMMNHSTIVMNKILESYRGFGDITRLVDVGGGVGITLKLITSKYPHIQGINFDLPHVIQHAPPCPGVEHVEGDMFETVPRGDAIFIKWILHDWSDEWCLKLLKNCHDAIPKDGKVIVVEAVLPVGSETSAAAKGITQFDVMMLTYCPGGKERTEHEFMKLATSAGFTGVRFDCFVRNFWIMEFFK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2546 341 Gene3D - 8 169 IPR036388 -
Prci2g2546 341 PANTHER O-METHYLTRANSFERASE 3 327 IPR016461 GO:0008168
Prci2g2546 341 Pfam O-methyltransferase domain 123 322 IPR001077 GO:0008171
Prci2g2546 341 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 98 339 IPR029063 -
Prci2g2546 341 CDD AdoMet_MTases 181 274 - -
Prci2g2546 341 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 341 IPR016461 GO:0008168
Prci2g2546 341 SUPERFAMILY "Winged helix" DNA-binding domain 1 95 IPR036390 -
Prci2g2546 341 FunFam Caffeic acid O-methyltransferase 93 341 - -
Prci2g2546 341 PIRSF O-mtase 1 341 IPR016461 GO:0008168
Prci2g2546 341 FunFam Caffeic acid 3-O-methyltransferase 1 92 - -
Prci2g2546 341 Gene3D Vaccinia Virus protein VP39 151 330 IPR029063 -
Prci2g2546 341 Pfam Dimerisation domain 11 59 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2546 Prci-Chr2 21435114 21439560 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2546 1 341 Monolignol Biosynthesis Gene Families AT5G54160 51.163 4.40e-124 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2546 K13066 - qsa:O6P43_027445 447.588