Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2527 ATGGAAGCTGCTATCGACTCCGCTTCGGAGCTCCAGCTTCCCGATTCCGATGTTGTGGCATTTAACGATCTGAATCAGCTCAGGTCGCCGCAGAATTCGGACGCCGGAGCATCTGCCTCTGCCGGTGGAGGCGCCAGGTACAAGCTGATGTCGCCGGCTAAGCTTCCGATCTCGAGGTCGCCTTGTATTACGATACCGCCAGGGTTGAGTCCGACGTCGTTTCTGGAGTCTCCCGTGCTTCTGTCCAACATGAAGGTAGAGCCCTCGCCAACAACAGGGTCCCTCACTAAGCCTCAAGCAGTGTTTGGTTCTGTTGCTTATGCAACATTTCCTGTAACAACTATATGCTCAAACACCAATACCGTTGACGGCAGAAAATCTGGCTTCTTTGAGTTTAACCCACACTGTAGAACAGATATGGTTCCTGCTGGTTTTAGCAACCATGTAATAAACGAACAATCCAGGCAAATAGATGGTCCAGGCATAGTTCAATCATATGCCTCATCAACATTAGTTAAAACTGAGACAGCAGTGCCATCAAATAAATCGAGTCTATCATCGACTATTCAAATGGTTAGTTCTGGTACTAGTGCTCCTGTTGAAGTTGATCCGGATAAACTTAACCAGAAAGGTAATGCTGCCCCTGGGCTTCGATCATCTTTAGTTGATGGTAGAGGAAATACCCTTCCAGTTGCAGCCGAGAGAATCTCAGATGATGGATACAATTGGCGGAAATATGGCCAGAAACATGTTAAGGGATGTGAATTTCCACGCAGCTACTACAAATGCACACACCCAAATTGTGAAGTAAAAAAGTTATTTGAACGCTCTCATGATGGGCAAATAACAGAGATAATTTATAAGGGAAAACATGATCATCCTAAACCTCAACCAAGCCGCCGTTACTCAGCTAGTACCATGATGTCTATACAAGAAGAGAGAACTGACAAGGCTTTGTCTGCCGGCCAAGATGACAAAGCATCCAATATGCATGCTCAGGTGCCTCACACAACTGAACCCAACAGTAACCCAGATCTATCTCCTGTACCTGCTGATAGTCCAGACGGTGTTGGGTTACTGTCAAATAGGGTTAATGATGAGGTTGATGATGATGATGACCCCTTCTCAAAGCGAAGCAAAATGGACATTGGAAATGCTGACATCACCCCTATAGTTAAGCCAATCCGAGAACCACGAGTTGTTGTACAAACACAAAGTGAGGTTGACATATTGGATGATGGTTACCGCTGGCGTAAGTATGGGCAGAAGGTGGTTAGAGGCAATCCTAACCCTAGGAGTTATTACAAGTGCACAAATGTTGGTTGCCCTGTTCGAAAACACGTGGAGAGAGCATCTCATGATCCCAAAGCAGTAATAACCACATACGAGGGTAAACACAATCACGACGTGCCCACTGCAAGGAGCACTAGCCATGACACTGCAGGACCAACAGTTGCTGCTGGTGGGCAGACAAGAATTAGACCAGAAGAAAGTGATACTGTTAGTCTTGACCTTGGGATGGGCATAAGATCAGCTGCTGAAAATACACCAAACAGACAAGGGCGGATGCTGCTCTCTGAATTTGGGAACAGTCAGACTCACTCCAGCAACACCAGTCTCAATTTTGTTCATAATACCCGTGCTCCAGCGTACTTCAGTGTTCTTCATAATGGCTCAAATCCATATGTTTCTAGAGAAAATCTGAGTGATGGTCCATCTTTGAACCATTCCTCATATCCGTGCCCTCCAAACATGGGAAGAATACTAACTGGTCCTTGA 1779 0.4598 MEAAIDSASELQLPDSDVVAFNDLNQLRSPQNSDAGASASAGGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLTKPQAVFGSVAYATFPVTTICSNTNTVDGRKSGFFEFNPHCRTDMVPAGFSNHVINEQSRQIDGPGIVQSYASSTLVKTETAVPSNKSSLSSTIQMVSSGTSAPVEVDPDKLNQKGNAAPGLRSSLVDGRGNTLPVAAERISDDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGKHDHPKPQPSRRYSASTMMSIQEERTDKALSAGQDDKASNMHAQVPHTTEPNSNPDLSPVPADSPDGVGLLSNRVNDEVDDDDDPFSKRSKMDIGNADITPIVKPIREPRVVVQTQSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSTSHDTAGPTVAAGGQTRIRPEESDTVSLDLGMGIRSAAENTPNRQGRMLLSEFGNSQTHSSNTSLNFVHNTRAPAYFSVLHNGSNPYVSRENLSDGPSLNHSSYPCPPNMGRILTGP 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2527 592 Gene3D WRKY domain 230 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 MobiDBLite consensus disorder prediction 299 313 - -
Prci2g2527 592 MobiDBLite consensus disorder prediction 286 381 - -
Prci2g2527 592 MobiDBLite consensus disorder prediction 565 592 - -
Prci2g2527 592 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 ProSiteProfiles WRKY domain profile. 232 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 Pfam WRKY DNA -binding domain 412 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 Pfam WRKY DNA -binding domain 238 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 Gene3D WRKY domain 398 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 SMART WRKY_cls 411 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 SMART WRKY_cls 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 MobiDBLite consensus disorder prediction 565 580 - -
Prci2g2527 592 MobiDBLite consensus disorder prediction 326 348 - -
Prci2g2527 592 FunFam WRKY transcription factor 33 398 464 - -
Prci2g2527 592 FunFam WRKY transcription factor 227 297 - -
Prci2g2527 592 SUPERFAMILY WRKY DNA-binding domain 235 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2527 592 MobiDBLite consensus disorder prediction 467 491 - -
Prci2g2527 592 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 512 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2527 Prci-Chr2 21072017 21079598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2527 50 592 WRKY Transcription Factor Family AT4G26640 53.442 1.65e-175 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Prci2g2527 WRKY 3.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2527 - - gmx:100781491 826.624