Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2526 ATGGAAGCTGCTATCGACTCCGCTTCGGAGCTCCAGCTTCCCGATTCCGATGTTGTGGCATTTAACGATCTGAATCAGCTCAGGTCGCCGCAGAATTCGGACGCCGGAGCATCTGCCTCTGCCGGTGGAGGCGCCAGGTACAAGCTGATGTCGCCGGCTAAGCTTCCGATCTCGAGGTCGCCTTGTATTACGATACCGCCAGGGTTGAGTCCGACGTCGTTTCTGGAGTCTCCCGTGCTTCTGTCCAACATGAAGGTTCCTGCTGGTTTTAGCAACCATGTAATAAACGAACAATCCAGGCAAATAGATGGTCCAGGCATAGTTCAATCATATGCCTCATCAACATTAGTTAAAACTGAGACAGCAGTGCCATCAAATAAATCGAGTCTATCATCGACTATTCAAATGGTTAGTTCTGGTACTAGTGCTCCTGTTGAAGTTGATCCGGATAAACTTAACCAGAAAGGTAATGCTGCCCCTGGGCTTCGATCATCTTTAGTTGATGGTAGAGGAAATACCCTTCCAGTTGCAGCCGAGAGAATCTCAGATGATGGATACAATTGGCGGAAATATGGCCAGAAACATGTTAAGGGATGTGAATTTCCACGCAGCTACTACAAATGCACACACCCAAATTGTGAAGTAAAAAAGTTATTTGAACGCTCTCATGATGGGCAAATAACAGAGATAATTTATAAGGGAAAACATGATCATCCTAAACCTCAACCAAGCCGCCGTTACTCAGCTAGTACCATGATGTCTATACAAGAAGAGAGAACTGACAAGGCTTTGTCTGCCGGCCAAGATGACAAAGCATCCAATATGCATGCTCAGGTGCCTCACACAACTGAACCCAACAGTAACCCAGATCTATCTCCTGTACCTGCTGATAGTCCAGACGGTGTTGGGTTACTGTCAAATAGGGTTAATGATGAGGTTGATGATGATGATGACCCCTTCTCAAAGCGAAGCAAAATGGACATTGGAAATGCTGACATCACCCCTATAGTTAAGCCAATCCGAGAACCACGAGTTGTTGTACAAACACAAAGTGAGGTTGACATATTGGATGATGGTTACCGCTGGCGTAAGTATGGGCAGAAGGTGGTTAGAGGCAATCCTAACCCTAGGAGTTATTACAAGTGCACAAATGTTGGTTGCCCTGTTCGAAAACACGTGGAGAGAGCATCTCATGATCCCAAAGCAGTAATAACCACATACGAGGGTAAACACAATCACGACGTGCCCACTGCAAGGAGCACTAGCCATGACACTGCAGGACCAACAGTTGCTGCTGGTGGGCAGACAAGAATTAGACCAGAAGAAAGTGATACTGTTAGTCTTGACCTTGGGATGGGCATAAGATCAGCTGCTGAAAATACACCAAACAGACAAGGGCGGATGCTGCTCTCTGAATTTGGGAACAGTCAGACTCACTCCAGCAACACCAGTCTCAATTTTGTTCATAATACCCGTGCTCCAGCGTACTTCAGTGTTCTTCATAATGGCTCAAATCCATATGTTTCTAGAGAAAATCTGAGTGATGGTCCATCTTTGAACCATTCCTCATATCCGTGCCCTCCAAACATGGGAAGAATACTAACTGGTCCTTGA 1614 0.461 MEAAIDSASELQLPDSDVVAFNDLNQLRSPQNSDAGASASAGGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVPAGFSNHVINEQSRQIDGPGIVQSYASSTLVKTETAVPSNKSSLSSTIQMVSSGTSAPVEVDPDKLNQKGNAAPGLRSSLVDGRGNTLPVAAERISDDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGKHDHPKPQPSRRYSASTMMSIQEERTDKALSAGQDDKASNMHAQVPHTTEPNSNPDLSPVPADSPDGVGLLSNRVNDEVDDDDDPFSKRSKMDIGNADITPIVKPIREPRVVVQTQSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSTSHDTAGPTVAAGGQTRIRPEESDTVSLDLGMGIRSAAENTPNRQGRMLLSEFGNSQTHSSNTSLNFVHNTRAPAYFSVLHNGSNPYVSRENLSDGPSLNHSSYPCPPNMGRILTGP 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2526 537 FunFam WRKY transcription factor 33 343 409 - -
Prci2g2526 537 MobiDBLite consensus disorder prediction 412 436 - -
Prci2g2526 537 MobiDBLite consensus disorder prediction 271 293 - -
Prci2g2526 537 MobiDBLite consensus disorder prediction 511 525 - -
Prci2g2526 537 SMART WRKY_cls 356 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 SMART WRKY_cls 182 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 MobiDBLite consensus disorder prediction 511 537 - -
Prci2g2526 537 SUPERFAMILY WRKY DNA-binding domain 348 416 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 ProSiteProfiles WRKY domain profile. 177 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 Gene3D WRKY domain 175 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 MobiDBLite consensus disorder prediction 244 258 - -
Prci2g2526 537 Gene3D WRKY domain 343 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 MobiDBLite consensus disorder prediction 231 326 - -
Prci2g2526 537 SUPERFAMILY WRKY DNA-binding domain 180 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 Pfam WRKY DNA -binding domain 357 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci2g2526 537 FunFam WRKY transcription factor 172 242 - -
Prci2g2526 537 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 457 IPR044810 GO:0003700
Prci2g2526 537 ProSiteProfiles WRKY domain profile. 351 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2526 Prci-Chr2 21072017 21079598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2526 50 537 WRKY Transcription Factor Family AT4G26640 50.184 1.36e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Prci2g2526 WRKY 3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2526 - - gmx:100816583 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g2526 2 21072017 21079598 Prci2g2526 2 21072017 21079598 ECH