Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2512 ATGAATTGCTCCGACATTGAAAATATTGGTGAAACTAGTATAAATTGGGAACAAGCTCTGCTACAGTATGAAAAAGTGATAGACTCGGGGACTAAGACTATGCAGATAAAAGCCATGATGAAGCTAGCTCGTCTCTCTAAACATGCCCCTGAGAGTTTATTAGTTCGTATCATACCCCATCTCACTGGGAATCTTGATGACTACCAGTCAATTCATTCAGGTTGTTCTCTTCAAAAGGCTTCTGCTTATTGCTTAAAATGTATAGGTTGTAGAGGTGATGGTGGGTTGGCAAGGGAAATAGGTAGACGTGGTGCAGCAAATTCTTTGTTATGGTGGTTATCACATTCAGTTGGGGAGTTTCAAGAAATCCTGATAAAATGTTTGCTTGTTGTTGTCACTTTTTGTAACTCAAGTCGTGCAGTCGTTGCTAGTAATGGCGGTGTAGAAGTCATCATCAGTTTGTTAAACTCTTCTACAAGTGATATTAGACTATACCTGTTGGAAATTTTGAGCGCATTGGCATTGCTTAGGGATGTTAGGAGGGCGCTCACTAGATTAGGAAGTCTTAAATTTCTTGTGGAGGCTGCTAGCTGTGGTAGCATGGTCTCTAGGGAAAGAGCTTGTCAAGCAATTGGGTTACTTGGTGTCCCAAGACGGGCAAGGCGTACACTTGTTGAACTAGGAGTTATACCAGTACTTGTTGAGTGTCTTCAAGATGGAGATCACCTCATGAAACTTGTGGCAGGCAATGCTCTTGGTGTGATCTCTGCTCATATTGATTATATCAGATTAGTTGCCCAATCTGGGGTTATCTGTCTTTATGCTGAGCTTCTTCAAGGACCTGACCCTTCTGGTATGGAGATTGCTGAGGATGTATTTTGTATATTGGCTGTTGCTGAGGAGAATGCTGTTGAAATCACCAGACACTTGGTGAGGATTCTTAGAGAAGGCGACGATGAAGCAAAGGCATCTGCTGCTGATGTGTTGTGGGATCTAGCAAGTTACAAGCACACAACATCTGTGGTCCGAGAGTCAGGTGTGATTCCAATTCTAGTGGGGCTTCTGCAGGCTGGAAATGAAGAGATAAAGCAGAATGTTTCTGGGGCATGTGCTCAGTTGAGTTATGATGAGGCAGATAGAATGGCACTTGCTGAAGCGGGGGCAATCCCGATTCTCATTGAAATGATGCTGCATGAAGAGTTGGAGGAAGTGAGGGATAATGCAGCTGAGGCTCTTGTCAACTTTGCTGAAGATCCTTTGTACCATGATAGAGTATCTGATGCAATAAGTGTTCCTTCATTTAGAGATATGCAGAACAGACTACTTCACATTCGTGCCTCAAATGAGCATATGGCCAGATCGTTACGAAGGATGACTGATTGGCAGCTCACATGGAACCCTGATCTTATGTAA 1413 0.4317 MNCSDIENIGETSINWEQALLQYEKVIDSGTKTMQIKAMMKLARLSKHAPESLLVRIIPHLTGNLDDYQSIHSGCSLQKASAYCLKCIGCRGDGGLAREIGRRGAANSLLWWLSHSVGEFQEILIKCLLVVVTFCNSSRAVVASNGGVEVIISLLNSSTSDIRLYLLEILSALALLRDVRRALTRLGSLKFLVEAASCGSMVSRERACQAIGLLGVPRRARRTLVELGVIPVLVECLQDGDHLMKLVAGNALGVISAHIDYIRLVAQSGVICLYAELLQGPDPSGMEIAEDVFCILAVAEENAVEITRHLVRILREGDDEAKASAADVLWDLASYKHTTSVVRESGVIPILVGLLQAGNEEIKQNVSGACAQLSYDEADRMALAEAGAIPILIEMMLHEELEEVRDNAAEALVNFAEDPLYHDRVSDAISVPSFRDMQNRLLHIRASNEHMARSLRRMTDWQLTWNPDLM 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2512 470 SMART arm_5 217 257 IPR000225 GO:0005515
Prci2g2512 470 SMART arm_5 291 334 IPR000225 GO:0005515
Prci2g2512 470 SMART arm_5 135 175 IPR000225 GO:0005515
Prci2g2512 470 SMART arm_5 335 375 IPR000225 GO:0005515
Prci2g2512 470 SMART arm_5 376 417 IPR000225 GO:0005515
Prci2g2512 470 Pfam HEAT repeats 308 412 - -
Prci2g2512 470 SUPERFAMILY ARM repeat 309 426 IPR016024 -
Prci2g2512 470 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 310 428 - -
Prci2g2512 470 Gene3D - 17 305 IPR011989 -
Prci2g2512 470 Gene3D - 308 451 IPR011989 -
Prci2g2512 470 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
Prci2g2512 470 SUPERFAMILY ARM repeat 4 335 IPR016024 -
Prci2g2512 470 Coils Coil 398 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2512 Prci-Chr2 20948711 20950931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2512 221 432 U-box Gene Family AT2G23140 26.484 1.04e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2512 - - gmx:100819735 602.053