Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2501 ATGGCGTTTGTTTTGGTGGGTTTTCTCCAAAATCCCATTTTCTCGCACTTGGCTTCTGCTTCTCTCCACTTAGCTTTATTACTAGTGTTTCTTGTCTCTTGGGCGTGGAAAAAGATTTCCCTGGGTACGAGAGATGATTCCAAAGAGAAACTTAAGAGCACTCAGTATAAGAGGACTCTGTTTTGTAGTCTTGGTGTTTCTGCATTTAACCTTGTCCTGTTTCTACTCTATTGCTTATATTGTTATGGACATGATTGGTCTGATGAAAAGTTGGCGACCCTTTTGGATATGGCGCTTAAATCAGTAGCTTGGGGGATTGTTGGTGCTTCTTCGCACACAGGATTCTTCAATTCAGGTGAAAGGAGATTTCCAATTTTCTTCAAAGCTTGGTGCGCTTTCTACCTCCTTATTTCATGTTACTGCTTTATGCTGGACGTTATTCTCCATCTTAAACACTTTTCAATACCACTTCTTCAGTATTTAGTTTCTGATGGCGTCTCCTCCTTTGTGGGTGTATTCTTTTGCTACGTGGTGCTTATGGTGAAAAATGAGAGCGAAGACATCCTTCTTCGAGAACCTCTTTTGAATGATGATACTGATGTTAGAAATTCACCAGAGTCAAATAAGACCAAGGGGGAGGAAACTGTTACTCCTTACTCTAATGCTGGAGTTTTCAGCATTCTTAGCTTCTCTTGGGTGGGTCCTCTGATTGCTGCTGGCAGAAAGAAGACTTTAAACCTCGAGGATGTCCCACAACTAGCTACTTGTGATAGTGTAGTTGGAGCTTTTCCAGCTTTTAGGAATAAACTTGAGGATGAGTTGGGTACATTAAAGAGAGTAACCACAATTAAGCTGGTAAAGTCATTAATACTCTCATCTTGGGAAGGTATATTAGCAACAGCTATTGTTGCACTTTTGAACACACTGACTTCTTACGTTGGTCCATATCTCATTGACACTTTTGTTCAATACCTCAATGGCAAACAAACATTTAAGGATGAGGGATATGTACTGGTGGCCGTGTTTTTGGCAGCAAAGCTTATAGAGTGTTTGTCACATAGGCAATGGTTCTTTAGGTTGAAGAGAGTTGGAATAAAGATCCGAGCACTGCTCGTGACGATAGTCTACAGTAAAGAGTTGACCCTTTCAGGTCAGTCCAAGCAAGGCCACACAACTGGTGAAATAATCAATTTCATGACAGTTGATGCTGAAAGAGTTGGAGACTTTGCTTGGAACATGCATGATCCATGGATAGTAATTCTGCAAGTAGCATTGGCCATGTTTATTTTGTATAGAAATCTCGGGATGGCTTCGATTGCAGCTTTTATTGCAACTGTTGTTGTAATGTTCACAAATGTTCCTTTTGCGTCATTGCAAGAAACATACGAAGACAAGTTGATGGAGTCAAAGGATAAAAGAATGAAGGCCACATCTGAGATTTTAAGGAATATGAGGATTCTAAAACTACAAGGATGGGAAATGAAGTTTCTGTCTAAGGTTATTGAACTGAGGAACACAGAGCAAAGCTGGTTAAGGAAAGATGTCTATACTTCAGCCATGATCACTTTTGTCCTATGGGGTGCCCCCGCATTCGTATCTGTGGTTACATTTTGCACTTGTATACTCATGGGGATCCCACTTGAATCAGGAAAGATCTTATCTGCGATTGCAACATTTCGAATGCTTCAAGAGCCAGTATATAGGCTTCCAGAGACAATTTCCATGATAGCACAAACTAAGGTATCTTTAGAGAGGATTGCATCATTCCTTCGTCTTGAAGAGCTGCAGTGTAATGTTATAGAAAAGATTCCAAAGGGTAGATCTAACATAGCTGTTGAAGTAGCCAATGGTAATTTTTCTTGGGACTTTTCATCTCCTACTACAACGTTAAAAAGTATAAATCTCACAATCCTTCAAGGCATGAGAGTTGCTGTTTGTGGTACTGTTGGTTCAGGCAAGTCTAGTCTAATATCTTGTATTTTGGGAGAAGTTCCAAAGATATCAGGAAACTTAAGAGTGTGCGGAACTAAGGCATTTGTTGCTCAGTCTCCATGGATTCAAAGTAGGAAGATCGAAGAGAATATATTATTTGGTAAGGAGATGGATAGGGAAAGATATGAGAAGGTTCTTGAAGCATGCTCCCTGAAGAAGGACCTTGAAATTTTGCCATTTGGTGATCAGACTATTATTGGAGAGAGGGGAATCAATTTGAGTGGTGGACAGAAACAGAGAATACAAATTGCACGGGCTCTTTATCAAGAGGCTGATATATATCTATTTGATGATCCCTTTAGTGCTGTGGATGCTCATACGGGATCCCACCTCTTTAAGGAATGTTTACTTGGCCTTTTAAGTTCGAAGACAATTATTTATATCACTCATCAAGTAGAGTTCTTGCCTCCAGCTGACCTTATCTTGGTCATGAAAGATGGGGAAATTACTCAATGTGGAAAGTATAATGATTTACTTGACTCTGGGACCGACTTCATGGAGCTTGTTGGAGCACATAGAAAAGCTTTGTCTGCACTTGATTCATTTGATGGAGGGGAAGCGTCTGATAAATTATGTGCAAGAAGTAGAGAAGTAAATATTTCTAATGCAAAAGTTACAAATGAAAAAAAGGAAGATAAAGATAGGCAAATTGGAAAAACAAATGGTGTAGTTGAACCAAAAGGTCAGCTCATTCAAGAGGAAGAAAGGGAGAAAGGTAGAGTTGGGCTTTCAGTCTATTGGAAATACATCACAACAGCATATGGAGGAGCTCTTGTACCATTTATATTGTTGGCTCAAATTCTGTTTCAACTTCTTCAAATTGGAAGCAATTATTGGATGGCCTGGGCAACTCCCATTTCATCAAATGTAATAGCACCTGCTGGAACCTTTATGCTTATGATTGTCTATGTTGCTTTGGCCATAGGAAGTTCTTTCTGCATCCTTTCCAGAACAATGCTCCTTTCTACTGCGGGTTATAAGACTGCAACTCTACTTTTCAACAAAATGCACAATTGCATTTTCCGCGCGCCTATGTCATTTTTTGATGCCACTCCAAGTGGAAGAATCATTAGTAGAGCTTCTACAGACCAAAGTGTATTGGATACAAACATTCCTTATAAATGTGGATCATTTGCATTCTCTTCAATTCAGCTTTTAGGAATTATATTAGTGATGTCTCAGGTTGCATGGCAGGTTTCCATCATCTTCATACCTGTAATATCTATGAGCATTTGGTGTCAGCAATACTATTTACCAACATCTCGAGAACTATCACGGATACTTGGACTTTGCAAAGCTCCAATTATTCAACACTTCTCTGAAACAATTTCAGGAGCAACAACTATCAGAAGCTTTGATCAGGAGTCAAGATTCCAGGAAACAAATATGAAATTGGTGGATGAGTATTCTCGTCTGAATTTCAATATTGCCGGCACTATGGAATGGCTCGTCTTCCGCTTGGATATGTTGTCTTCAATCACATTTGCTTTTTTCTTGATATTCCTGATATTTATGTCCAAGGGAGTGGTAGATCCAGGCATTGCTGGATTAGCTGTTACATATGGACTTAACCTGAACTTGTTACAAGCTTGGATGATGGTGGATCTTAGCAAAATGGAAAATAAAATTATATCAGTGGAGAGAGTATTACAGTACACTTGCATTCCAAGTGAGCCTCCCCTTGTAATAGAAGAAAATCGACCTTATCTTTCATGGCCTTCACATGGAGAAGTTGATATTATTGATCTACAGGATCATTGA 3753 0.3941 MAFVLVGFLQNPIFSHLASASLHLALLLVFLVSWAWKKISLGTRDDSKEKLKSTQYKRTLFCSLGVSAFNLVLFLLYCLYCYGHDWSDEKLATLLDMALKSVAWGIVGASSHTGFFNSGERRFPIFFKAWCAFYLLISCYCFMLDVILHLKHFSIPLLQYLVSDGVSSFVGVFFCYVVLMVKNESEDILLREPLLNDDTDVRNSPESNKTKGEETVTPYSNAGVFSILSFSWVGPLIAAGRKKTLNLEDVPQLATCDSVVGAFPAFRNKLEDELGTLKRVTTIKLVKSLILSSWEGILATAIVALLNTLTSYVGPYLIDTFVQYLNGKQTFKDEGYVLVAVFLAAKLIECLSHRQWFFRLKRVGIKIRALLVTIVYSKELTLSGQSKQGHTTGEIINFMTVDAERVGDFAWNMHDPWIVILQVALAMFILYRNLGMASIAAFIATVVVMFTNVPFASLQETYEDKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKVIELRNTEQSWLRKDVYTSAMITFVLWGAPAFVSVVTFCTCILMGIPLESGKILSAIATFRMLQEPVYRLPETISMIAQTKVSLERIASFLRLEELQCNVIEKIPKGRSNIAVEVANGNFSWDFSSPTTTLKSINLTILQGMRVAVCGTVGSGKSSLISCILGEVPKISGNLRVCGTKAFVAQSPWIQSRKIEENILFGKEMDRERYEKVLEACSLKKDLEILPFGDQTIIGERGINLSGGQKQRIQIARALYQEADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTIIYITHQVEFLPPADLILVMKDGEITQCGKYNDLLDSGTDFMELVGAHRKALSALDSFDGGEASDKLCARSREVNISNAKVTNEKKEDKDRQIGKTNGVVEPKGQLIQEEEREKGRVGLSVYWKYITTAYGGALVPFILLAQILFQLLQIGSNYWMAWATPISSNVIAPAGTFMLMIVYVALAIGSSFCILSRTMLLSTAGYKTATLLFNKMHNCIFRAPMSFFDATPSGRIISRASTDQSVLDTNIPYKCGSFAFSSIQLLGIILVMSQVAWQVSIIFIPVISMSIWCQQYYLPTSRELSRILGLCKAPIIQHFSETISGATTIRSFDQESRFQETNMKLVDEYSRLNFNIAGTMEWLVFRLDMLSSITFAFFLIFLIFMSKGVVDPGIAGLAVTYGLNLNLLQAWMMVDLSKMENKIISVERVLQYTCIPSEPPLVIEENRPYLSWPSHGEVDIIDLQDH 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2501 1250 SMART AAA_5 639 812 IPR003593 GO:0016887
Prci2g2501 1250 CDD ABC_6TM_ABCC_D1 300 586 IPR044746 GO:0140359
Prci2g2501 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 612 835 IPR003439 GO:0005524
Prci2g2501 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 834 IPR027417 -
Prci2g2501 1250 Pfam ABC transporter 630 764 IPR003439 GO:0005524
Prci2g2501 1250 Gene3D - 588 845 IPR027417 -
Prci2g2501 1250 Pfam ABC transporter transmembrane region 926 1178 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g2501 1250 Pfam ABC transporter transmembrane region 300 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g2501 1250 SUPERFAMILY ABC transporter transmembrane region 287 594 IPR036640 GO:0005524|GO:0016020
Prci2g2501 1250 Gene3D ABC transporter type 1, transmembrane domain 287 587 IPR036640 GO:0005524|GO:0016020
Prci2g2501 1250 SUPERFAMILY ABC transporter transmembrane region 923 1223 IPR036640 GO:0005524|GO:0016020
Prci2g2501 1250 CDD ABC_6TM_ABCC_D2 923 1217 IPR044726 GO:0140359
Prci2g2501 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 296 578 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g2501 1250 CDD ABCC_MRP_domain1 612 812 - -
Prci2g2501 1250 FunFam ABC transporter C family member 5 597 844 - -
Prci2g2501 1250 FunFam ABC transporter C family member 5 887 1223 - -
Prci2g2501 1250 Gene3D ABC transporter type 1, transmembrane domain 887 1223 IPR036640 GO:0005524|GO:0016020
Prci2g2501 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 925 1205 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g2501 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 219 1247 - -
Prci2g2501 1250 FunFam ABC transporter C family member 10 281 594 - -
Prci2g2501 1250 ProSitePatterns ABC transporters family signature. 737 751 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2501 Prci-Chr2 20736066 20741123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2501 612 841 Calmodulin-binding Proteins AT2G36910 30.800 1.69e-26 116