Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2500 ATGGCGTTTGTTTTGGTGGGTTTTCTCCAAAATCCCATTTTCTCGCACTTGGCTTCTGCTTCTCTCCACTTAGCTTTATTACTAGTGTTTCTTGTCTCTTGGGCGTGGAAAAAGATTTCCCTGGGTACGAGAGATGATTCCAAAGAGAAACTTAAGAGCACTCAGTATAAGAGGACTCTGTTTTGTAGTCTTGGTGTTTCTGCATTTAACCTTGTCCTGTTTCTACTCTATTGCTTATATTGTTATGGACATGATTGGTCTGATGAAAAGTTGGCGACCCTTTTGGATATGGCGCTTAAATCAGTAGCTTGGGGGATTGTTGGTGCTTCTTCGCACACAGGATTCTTCAATTCAGGTGAAAGGAGATTTCCAATTTTCTTCAAAGCTTGGTGCGCTTTCTACCTCCTTATTTCATGTTACTGCTTTATGCTGGACGTTATTCTCCATCTTAAACACTTTTCAATACCACTTCTTCAGTATTTAGTTTCTGATGGCGTCTCCTCCTTTGTGGGTGTATTCTTTTGCTACGTGGTGCTTATGGTGAAAAATGAGAGCGAAGACATCCTTCTTCGAGAACCTCTTTTGAATGATGATACTGATGTTAGAAATTCACCAGAGTCAAATAAGACCAAGGGGGAGGAAACTGTTACTCCTTACTCTAATGCTGGAGTTTTCAGCATTCTTAGCTTCTCTTGGGTGGGTCCTCTGATTGCTGCTGGCAGAAAGAAGACTTTAAACCTCGAGGATGTCCCACAACTAGCTACTTGTGATAGTGTAGTTGGAGCTTTTCCAGCTTTTAGGAATAAACTTGAGGATGAGTTGGGTACATTAAAGAGAGTAACCACAATTAAGCTGGTAAAGTCATTAATACTCTCATCTTGGGAAGGTATATTAGCAACAGCTATTGTTGCACTTTTGAACACACTGACTTCTTACGTTGGTCCATATCTCATTGACACTTTTGTTCAATACCTCAATGGCAAACAAACATTTAAGGATGAGGGATATGTACTGGTGGCCGTGTTTTTGGCAGCAAAGCTTATAGAGTGTTTGTCACATAGGCAATGGTTCTTTAGGTTGAAGAGAGTTGGAATAAAGATCCGAGCACTGCTCGTGACGATAGTCTACAGTAAAGAGTTGACCCTTTCAGGTCAGTCCAAGCAAGGCCACACAACTGGTGAAATAATCAATTTCATGACAGTTGATGCTGAAAGAGTTGGAGACTTTGCTTGGAACATGCATGATCCATGGATAGTAATTCTGCAAGTAGCATTGGCCATGTTTATTTTGTATAGAAATCTCGGGATGGCTTCGATTGCAGCTTTTATTGCAACTGTTGTTGTAATGTTCACAAATGTTCCTTTTGCGTCATTGCAAGAAACATACGAAGACAAGTTGATGGAGTCAAAGGATAAAAGAATGAAGGCCACATCTGAGATTTTAAGGAATATGAGGATTCTAAAACTACAAGGATGGGAAATGAAGTTTCTGTCTAAGGTTATTGAACTGAGGAACACAGAGCAAAGCTGGTTAAGGAAAGATGTCTATACTTCAGCCATGATCACTTTTGTCCTATGGGGTGCCCCCGCATTCGTATCTGTGGTTACATTTTGCACTTGTATACTCATGGGGATCCCACTTGAATCAGGAAAGATCTTATCTGCGATTGCAACATTTCGAATGCTTCAAGAGCCAGTATATAGGCTTCCAGAGACAATTTCCATGATAGCACAAACTAAGGTATCTTTAGAGAGGATTGCATCATTCCTTCGTCTTGAAGAGCTGCAGTGTAATGTTATAGAAAAGATTCCAAAGGGTAGATCTAACATAGCTGTTGAAGTAGCCAATGGTAATTTTTCTTGGGACTTTTCATCTCCTACTACAACGTTAAAAAGTATAAATCTCACAATCCTTCAAGGCATGAGAGTTGCTGTTTGTGGTACTGTTGGTTCAGGCAAGTCTAGTCTAATATCTTGTATTTTGGGAGAAGTTCCAAAGATATCAGGAAACTTAAGAGTGTGCGGAACTAAGGCATTTGTTGCTCAGTCTCCATGGATTCAAAGTAGGAAGATCGAAGAGAATATATTATTTGGTAAGGAGATGGATAGGGAAAGATATGAGAAGGTTCTTGAAGCATGCTCCCTGAAGAAGGACCTTGAAATTTTGCCATTTGGTGATCAGACTATTATTGGAGAGAGGGGAATCAATTTGAGTGGTGGACAGAAACAGAGAATACAAATTGCACGGGCTCTTTATCAAGAGGCTGATATATATCTATTTGATGATCCCTTTAGTGCTGTGGATGCTCATACGGGATCCCACCTCTTTAAGGTCATGAAAGATGGGGAAATTACTCAATGTGGAAAGTATAATGATTTACTTGACTCTGGGACCGACTTCATGGAGCTTGTTGGAGCACATAGAAAAGCTTTGTCTGCACTTGATTCATTTGATGGAGGGGAAGCGTCTGATAAATTATGTGCAAGAAGTAGAGAAGTAAATATTTCTAATGCAAAAGTTACAAATGAAAAAAAGGAAGATAAAGATAGGCAAATTGGAAAAACAAATGGTGTAGTTGAACCAAAAGGTCAGCTCATTCAAGAGGAAGAAAGGGAGAAAGGTAGAGTTGGGCTTTCAGTCTATTGGAAATACATCACAACAGCATATGGAGGAGCTCTTGTACCATTTATATTGTTGGCTCAAATTCTGTTTCAACTTCTTCAAATTGGAAGCAATTATTGGATGGCCTGGGCAACTCCCATTTCATCAAATGTAATAGCACCTGCTGGAACCTTTATGCTTATGATTGTCTATGTTGCTTTGGCCATAGGAAGTTCTTTCTGCATCCTTTCCAGAACAATGCTCCTTTCTACTGCGGGTTATAAGACTGCAACTCTACTTTTCAACAAAATGCACAATTGCATTTTCCGCGCGCCTATGTCATTTTTTGATGCCACTCCAAGTGGAAGAATCATTAGTAGAGCTTCTACAGACCAAAGTGTATTGGATACAAACATTCCTTATAAATGTGGATCATTTGCATTCTCTTCAATTCAGCTTTTAGGAATTATATTAGTGATGTCTCAGGTTGCATGGCAGGTTTCCATCATCTTCATACCTGTAATATCTATGAGCATTTGGTGTCAGCAATACTATTTACCAACATCTCGAGAACTATCACGGATACTTGGACTTTGCAAAGCTCCAATTATTCAACACTTCTCTGAAACAATTTCAGGAGCAACAACTATCAGAAGCTTTGATCAGGAGTCAAGATTCCAGGAAACAAATATGAAATTGGTGGATGAGTATTCTCGTCTGAATTTCAATATTGCCGGCACTATGGAATGGCTCGTCTTCCGCTTGGATATGTTGTCTTCAATCACATTTGCTTTTTTCTTGATATTCCTGATATTTATGTCCAAGGGAGTGGTAGATCCAGGCATTGCTGGATTAGCTGTTACATATGGACTTAACCTGAACTTGTTACAAGCTTGGATGATGGTGGATCTTAGCAAAATGGAAAATAAAATTATATCAGTGGAGAGAGTATTACAGTACACTTGCATTCCAAGTGAGCCTCCCCTTGTAATAGAAGAAAATCGACCTTATCTTTCATGGCCTTCACATGGAGAAGTTGATATTATTGATCTACAGGTTCGTTATGCCCCACATTTACCACTTGTATTGCATAGCATAACATGCAAATTCCACGGAGGAATGAAAACTGGCATAGTAGGGAGAACAGGAAGTGGTAAAACAACTCTCATACAAACACTTTTTAGGATCATTGAGCCGACTGCCGGGAAAATTGTGATTGACGGAATTAATATCTCGTCAATTGGACTTCATGATTTGAGGTCCAGGCTTAGCATTATTCCTCAAGATCCAACCATGTTTGAAGGCACAGTGAGAAGTAATCTAGACCCTTTGGAAGAGTACACAGATGAACAAATTTGGGAGGCTTTGGATAAGTGCCAACTTGGAGATGAAGTTCGAAAGAAAGAAGGAAAGCTGGACTCTGCAGTTAATGAAAACGGTGAGAATTGGAGCATGGGTCAGAGGCAATTGGTGTGCCTTGGTAGGGTGCTACTTAAGAGAAGTAAGGTGTTGGTGCTTGATGAAGCTACTGCTTCGGTTGATACTGCCACTGATAATTTGATTCAGCAAACTCTTCGACAACACTTCTCTGACTGTACTGTCATTACCATTGCACATAGAATAACTTCTATTCTTGACAGTGATATGGTTTTGCTTCTTAATCAAGGACTCATTGAAGAGTATAACTCACCAGCAAAATTGCTAGAGGACAAGTCATCTTCATTTGCTCAACTTGTTGCAGAATATACCATAAGATCCAAGTCCAGTTTAGAGTGA 4377 0.3973 MAFVLVGFLQNPIFSHLASASLHLALLLVFLVSWAWKKISLGTRDDSKEKLKSTQYKRTLFCSLGVSAFNLVLFLLYCLYCYGHDWSDEKLATLLDMALKSVAWGIVGASSHTGFFNSGERRFPIFFKAWCAFYLLISCYCFMLDVILHLKHFSIPLLQYLVSDGVSSFVGVFFCYVVLMVKNESEDILLREPLLNDDTDVRNSPESNKTKGEETVTPYSNAGVFSILSFSWVGPLIAAGRKKTLNLEDVPQLATCDSVVGAFPAFRNKLEDELGTLKRVTTIKLVKSLILSSWEGILATAIVALLNTLTSYVGPYLIDTFVQYLNGKQTFKDEGYVLVAVFLAAKLIECLSHRQWFFRLKRVGIKIRALLVTIVYSKELTLSGQSKQGHTTGEIINFMTVDAERVGDFAWNMHDPWIVILQVALAMFILYRNLGMASIAAFIATVVVMFTNVPFASLQETYEDKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKVIELRNTEQSWLRKDVYTSAMITFVLWGAPAFVSVVTFCTCILMGIPLESGKILSAIATFRMLQEPVYRLPETISMIAQTKVSLERIASFLRLEELQCNVIEKIPKGRSNIAVEVANGNFSWDFSSPTTTLKSINLTILQGMRVAVCGTVGSGKSSLISCILGEVPKISGNLRVCGTKAFVAQSPWIQSRKIEENILFGKEMDRERYEKVLEACSLKKDLEILPFGDQTIIGERGINLSGGQKQRIQIARALYQEADIYLFDDPFSAVDAHTGSHLFKVMKDGEITQCGKYNDLLDSGTDFMELVGAHRKALSALDSFDGGEASDKLCARSREVNISNAKVTNEKKEDKDRQIGKTNGVVEPKGQLIQEEEREKGRVGLSVYWKYITTAYGGALVPFILLAQILFQLLQIGSNYWMAWATPISSNVIAPAGTFMLMIVYVALAIGSSFCILSRTMLLSTAGYKTATLLFNKMHNCIFRAPMSFFDATPSGRIISRASTDQSVLDTNIPYKCGSFAFSSIQLLGIILVMSQVAWQVSIIFIPVISMSIWCQQYYLPTSRELSRILGLCKAPIIQHFSETISGATTIRSFDQESRFQETNMKLVDEYSRLNFNIAGTMEWLVFRLDMLSSITFAFFLIFLIFMSKGVVDPGIAGLAVTYGLNLNLLQAWMMVDLSKMENKIISVERVLQYTCIPSEPPLVIEENRPYLSWPSHGEVDIIDLQVRYAPHLPLVLHSITCKFHGGMKTGIVGRTGSGKTTLIQTLFRIIEPTAGKIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSAVNENGENWSMGQRQLVCLGRVLLKRSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSILDSDMVLLLNQGLIEEYNSPAKLLEDKSSSFAQLVAEYTIRSKSSLE 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2500 1458 CDD ABC_6TM_ABCC_D1 300 586 IPR044746 GO:0140359
Prci2g2500 1458 Gene3D - 595 816 IPR027417 -
Prci2g2500 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 805 IPR027417 -
Prci2g2500 1458 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1213 1447 IPR003439 GO:0005524
Prci2g2500 1458 FunFam ABC transporter C family member 5 858 1194 - -
Prci2g2500 1458 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 296 578 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g2500 1458 Pfam ABC transporter 1230 1378 IPR003439 GO:0005524
Prci2g2500 1458 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 219 1447 - -
Prci2g2500 1458 SMART AAA_5 1239 1424 IPR003593 GO:0016887
Prci2g2500 1458 SMART AAA_5 639 839 IPR003593 GO:0016887
Prci2g2500 1458 FunFam ABC transporter C family member 5 597 778 - -
Prci2g2500 1458 FunFam ABC transporter C family member 3 1196 1448 - -
Prci2g2500 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1202 1443 IPR027417 -
Prci2g2500 1458 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 612 838 IPR003439 GO:0005524
Prci2g2500 1458 CDD ABC_6TM_ABCC_D2 894 1188 IPR044726 GO:0140359
Prci2g2500 1458 Pfam ABC transporter 630 764 IPR003439 GO:0005524
Prci2g2500 1458 SUPERFAMILY ABC transporter transmembrane region 287 594 IPR036640 GO:0005524|GO:0016020
Prci2g2500 1458 FunFam ABC transporter C family member 10 281 594 - -
Prci2g2500 1458 Gene3D ABC transporter type 1, transmembrane domain 858 1194 IPR036640 GO:0005524|GO:0016020
Prci2g2500 1458 Gene3D ABC transporter type 1, transmembrane domain 269 594 IPR036640 GO:0005524|GO:0016020
Prci2g2500 1458 CDD ABCC_MRP_domain2 1211 1431 - -
Prci2g2500 1458 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 896 1176 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g2500 1458 Pfam ABC transporter transmembrane region 897 1149 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g2500 1458 Pfam ABC transporter transmembrane region 300 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g2500 1458 SUPERFAMILY ABC transporter transmembrane region 894 1194 IPR036640 GO:0005524|GO:0016020
Prci2g2500 1458 CDD ABCC_MRP_domain1 612 777 - -
Prci2g2500 1458 Gene3D - 1197 1449 IPR027417 -
Prci2g2500 1458 ProSitePatterns ABC transporters family signature. 737 751 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2500 Prci-Chr2 20736066 20742296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2500 612 812 Calmodulin-binding Proteins AT2G36910 27.711 2.09e-18 90.1