Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2444 ATGGCGGACTCGGACAACGACTCCGGAGGTGCTAATAACGCAGGGAGCAATGCAAACAGCAGCGAACAATCACTGCGAGAGCAAGACCGGTTTCTACCAATCGCGAATGTGAGCAGGATCATGAAGAAGGCTCTTCCAGCGAACGCGAAGATCTCTAAGGACGCCAAGGAGACGGTGCAAGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGAGAGAGAAGCGGAAGACCATCAATGGCGACGATTTGCTGTGGGCTATGACGACGTTGGGATTTGAAGACTACGTGGAGCCGCTCAAGATATACCTCCAGCGATTTAGGGAAATGGAAGGCGAGAAGAGCGTTGCGGCGCGTGACAAGGACGGCGGGATTGGAGGCGTGAACGTCGTTAATAGTGGCTTCGAGGGCGGAGGGGGCAGTGGTGGTGGTGGTGGTGGAGTGTATGGAGGAGTAGGGATGATGATGCATCAGGGACACGTGTACGGCTCTGGTGGGTTTCATCCAATGGCTGTGAGTGGAGGAAGTGGTGGTCCTGTGATGGGTAAGAGTGGACCCAGCTATCCCGGTGCGGGATCTAATGCAGGTAGGCCCAGATAG 621 0.5588 MADSDNDSGGANNAGSNANSSEQSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVAARDKDGGIGGVNVVNSGFEGGGGSGGGGGGVYGGVGMMMHQGHVYGSGGFHPMAVSGGSGGPVMGKSGPSYPGAGSNAGRPR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2444 206 FunFam Nuclear transcription factor Y subunit B-3 20 139 - -
Prci2g2444 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci2g2444 206 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Prci2g2444 206 MobiDBLite consensus disorder prediction 1 27 - -
Prci2g2444 206 MobiDBLite consensus disorder prediction 183 206 - -
Prci2g2444 206 SUPERFAMILY Histone-fold 28 127 IPR009072 GO:0046982
Prci2g2444 206 MobiDBLite consensus disorder prediction 1 28 - -
Prci2g2444 206 Gene3D Histone, subunit A 18 133 IPR009072 GO:0046982
Prci2g2444 206 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Prci2g2444 206 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Prci2g2444 206 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Prci2g2444 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2444 Prci-Chr2 19828158 19829489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2444 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.600 3.77e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci2g2444 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2444 K08065 - qsa:O6P43_013552 262.307