Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2406 ATGATTCCCAACATTTTCATCATCAACATTTTGCTTTGCCTAGCTTCTCATCAACCTGCGTTGCCAACTAGAGCTGCCCTGGCCACTAGGTTAGACTCAGAAACTGATAAGCTTGCCTTGCTTGCTTTGAAGGATAAGCTCACCAATGGCCTCCCAAAAGCTTTGCCTTCATGGAATGATTCTATTCACTTTTGTAAGTGGCAAGGAGTTTATTGCAATCGCCGTCACATGAGAGTCTTTGCTTTGGACTTAGCAAATCAAACTTTGGGTGGGACTCTGGCACCAAGTTTAGGTAACTTAACCTTTCTTAAATTTCTTCGTCTTTCTCGTAATGGATTGCACGGTCAAATTCCCAAACAAATTGGCCATCTGAAACGATTGCAGCATCTCAACTTGGAGGGTAATTTTCTCATGGGAAAGGCTCCTGAAGAGTTGGGAAACTGTTCTAAACTCCAAAAGATTTTCTTCCACAAAAATAATTTGACTGGGGAAATTCCCTCATCATTTGGTTCTATGCATCAACTTAATCTGTTAGCTCTTGGCGATAATAAATTTCTTGGTTCTATTCCACCTACTTTGGGAAACCTTTCGTCATTGGAGGGCTTGTATCTCGCAGAAAATAATTTGGAGGGAAGTATACCTCAATCTCTAGGTGGGTTGTCAAATTTGAAAGGGCTCTATCTTGGTGAAAACAATTTTTCTGGTATAATCCCATCTTCACTTTATAATCTTTCTAGCTTAACATATTTTGACATTCCTTACAACCACTTGTCTGGAACCATTCCATCAAGTATAGACCTTGCTTTCCCTAATCTACAATATATTAATGTTGAATACAACTTTTTGACTGGAACAATTCCATCTTCATTATCCAACATGTCCCAATTGCAACTATTTGATATAGCCCATAATGATTTTAGTGGCTTACTCCCTACCACTTTGGGCAGATTGCAGAACCTGCGTAAGTTCTTTATTCATCAAAACAATTTTGGAAGAGGAGATGGTCATGATTTTGATTTCCTCTCATCATTAACAAATTGTAGTCAGTTGTATTTGTTGGACATTGAAGATAGTGGATTAGGTGGCATTTTGCCAAATTCAATTGGGAATTTCTCTTCCGGCCATATTGGTATACTTGCTATGGGAATGAACCACATCTCTGGAAGCATACCTCATGAAATTGGGCAATTGACTAGCTTAATTTACCTTGATTTGGAAGAAAACTTCCTTCAAGGCAGTCTTCCACATTCATTTGGAAAGCTTGAGAATATTGGAAAAATATTATTGCGTGAAAACCAATTATCAGGAAAAATTCCTGATGTTTTTGGAAATCTTACCAAGTTGTATTTTCTTGATTTGTTGCATAATAACTTTGAGGGAACCATACCAGTTAGCCTCAAATTTTGTAAGGGTATGCAAATCCTATTCCTAAATCAAAATAATTTGACTGGCTATATACCAAATGAAACATTTGAACATCAAGAAGGCTTAATATTTCTGGACATGTCATCCAATTCCTTGACTGGTCCACTTCCATCTGGGTTTGGTAGCTTGAAGCATCTGGTGGAATTGCATGTTGATGAAAACAAGTTTTCCGGTGATATTCCAATGGAACTTGAGGGATGCCTAGGACTGTCAATTCTTAATATGAGTGGAAACTTCTTCGAAGGAAGTATTCCCTCATCCTTTGGTTCATTAAAATCTCTCCAAAGCTTAGATCTTTCCAAAAATAACTTGTCAGGTGCAATCCCGCATCAACTAAAAGATCTTCCGAAATTGACAACCTTAAACCTATCTTATAATCAGTTTCAAGGTGAGGTTCCAAAAGGAGGAGTGTTTGATAATATCACTGCTATTTCACTCACAGGAAATGAGGATCTTTGTGGTGGAATACCTCAACTTAAGCTGCCAACATGCCCAAGAAAGCAAAAGAAGCATTTCAAAATCACAATCATCATGACTATGATAAGTTGTGCTCTTGCTATCTTGGCAATTTTCCTCATTATTTATATGAGGAGAAAGCAAAAAAAGTTGGTATCGTCCCCATCTCCTCAAAATACTCATTTGAGGGTTTCTTATAGGGAGTTATATAGTGCAACAAATGGATTCTCTTCATCCAATTTGATTGGCACAGGAAGCTTTGGTTCAGTATACAAAGGAACTCTTCACCACTTTGAAATACCTATAGCTATAAAGGTGCTAAATCTTCAAACACATGGGGCAACAAAGAGTTTCATTGTAGAATGCAAAACTCTTGGCAAAGTGCGGCATAGGAATCTTTTGAAGATTTTGACTTCATGTTCAAGTGTTGATTACAAAGGCAATGACTTTAAGGCCATTGTTTTTGAGTTCATGCCTAATGGGAGCTTGGAGAATTGGTTGTCAGCAAAAGAACTTAGTGAACCTAGAAACTTATATATGAATTTCACACAAAGATTGGATATAGCTATTGATGTGGCTCATGCTTTGGATTATCTTCATAATGATTTTGAAGAGACTATTGTTCATTGCGACATCAAGCCAAGCAATGTTCTTCTTGGTGCTGATATGGTTGCACACTTGGGAGACTTTGGATTAGCTAGGCTTCTTCATGAGATTACAAGCTATTCTGGTGAAGGTCAAACTTCATCCTTTGCAGCAATTAAAGGTACTATTGGGTATATTCCTCCAGAGTATGGAGAAAGTGGCCGAGTTACAGTACAAGGAGATATTTACAGCTATGGGGTTCTCATGCTAGAGTTGCTCACTAGAAAGAAACCAACAGATGGCATGTTTAGTGGTGATCTAAGCCTACCCAAATTTTGCAAGTTGGCATTGCCAGAACGAATCTTTGAGATGGTGGATTCAAGTTTTCTTGTTCGATTCCATAAAGATCATAGGAAGGTTATGCAGAATTCAGACGTGGAGCATAAAATTCAAGAGTGCCTAGTTAGCTTTGCCAGGATTGGAGTGGCATGTTGTGCAGAATTGCCTTTTGAACGGATGGGCATTAAAGATGTTTTATCAGAGTTACTTGCAATTAAGAAGAAGCTATCCACTTTCAACATTGTCATATGA 3057 0.3801 MIPNIFIINILLCLASHQPALPTRAALATRLDSETDKLALLALKDKLTNGLPKALPSWNDSIHFCKWQGVYCNRRHMRVFALDLANQTLGGTLAPSLGNLTFLKFLRLSRNGLHGQIPKQIGHLKRLQHLNLEGNFLMGKAPEELGNCSKLQKIFFHKNNLTGEIPSSFGSMHQLNLLALGDNKFLGSIPPTLGNLSSLEGLYLAENNLEGSIPQSLGGLSNLKGLYLGENNFSGIIPSSLYNLSSLTYFDIPYNHLSGTIPSSIDLAFPNLQYINVEYNFLTGTIPSSLSNMSQLQLFDIAHNDFSGLLPTTLGRLQNLRKFFIHQNNFGRGDGHDFDFLSSLTNCSQLYLLDIEDSGLGGILPNSIGNFSSGHIGILAMGMNHISGSIPHEIGQLTSLIYLDLEENFLQGSLPHSFGKLENIGKILLRENQLSGKIPDVFGNLTKLYFLDLLHNNFEGTIPVSLKFCKGMQILFLNQNNLTGYIPNETFEHQEGLIFLDMSSNSLTGPLPSGFGSLKHLVELHVDENKFSGDIPMELEGCLGLSILNMSGNFFEGSIPSSFGSLKSLQSLDLSKNNLSGAIPHQLKDLPKLTTLNLSYNQFQGEVPKGGVFDNITAISLTGNEDLCGGIPQLKLPTCPRKQKKHFKITIIMTMISCALAILAIFLIIYMRRKQKKLVSSPSPQNTHLRVSYRELYSATNGFSSSNLIGTGSFGSVYKGTLHHFEIPIAIKVLNLQTHGATKSFIVECKTLGKVRHRNLLKILTSCSSVDYKGNDFKAIVFEFMPNGSLENWLSAKELSEPRNLYMNFTQRLDIAIDVAHALDYLHNDFEETIVHCDIKPSNVLLGADMVAHLGDFGLARLLHEITSYSGEGQTSSFAAIKGTIGYIPPEYGESGRVTVQGDIYSYGVLMLELLTRKKPTDGMFSGDLSLPKFCKLALPERIFEMVDSSFLVRFHKDHRKVMQNSDVEHKIQECLVSFARIGVACCAELPFERMGIKDVLSELLAIKKKLSTFNIVI 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2406 1018 FunFam LRR receptor-like serine/threonine-protein kinase EFR 674 784 - -
Prci2g2406 1018 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Prci2g2406 1018 Pfam Leucine rich repeat 472 531 IPR001611 GO:0005515
Prci2g2406 1018 Pfam Leucine rich repeat 545 603 IPR001611 GO:0005515
Prci2g2406 1018 Pfam Leucine rich repeat 270 330 IPR001611 GO:0005515
Prci2g2406 1018 FunFam LRR receptor-like serine/threonine-protein kinase EFR 336 645 - -
Prci2g2406 1018 SMART serkin_6 703 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g2406 1018 SMART LRR_typ_2 196 219 IPR003591 -
Prci2g2406 1018 SMART LRR_typ_2 590 615 IPR003591 -
Prci2g2406 1018 SMART LRR_typ_2 220 243 IPR003591 -
Prci2g2406 1018 SMART LRR_typ_2 566 589 IPR003591 -
Prci2g2406 1018 SMART LRR_typ_2 293 316 IPR003591 -
Prci2g2406 1018 SMART LRR_typ_2 100 124 IPR003591 -
Prci2g2406 1018 SMART LRR_typ_2 397 420 IPR003591 -
Prci2g2406 1018 Pfam Protein kinase domain 705 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g2406 1018 SUPERFAMILY L domain-like 34 330 - -
Prci2g2406 1018 PANTHER OS04G0122200 PROTEIN 218 1009 - -
Prci2g2406 1018 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Prci2g2406 1018 SUPERFAMILY Protein kinase-like (PK-like) 677 1004 IPR011009 -
Prci2g2406 1018 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Prci2g2406 1018 Gene3D Ribonuclease Inhibitor 192 333 IPR032675 -
Prci2g2406 1018 Gene3D Phosphorylase Kinase; domain 1 666 784 - -
Prci2g2406 1018 SUPERFAMILY L domain-like 375 629 - -
Prci2g2406 1018 ProSiteProfiles Protein kinase domain profile. 703 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g2406 1018 Gene3D Transferase(Phosphotransferase) domain 1 785 1015 - -
Prci2g2406 1018 FunFam Leucine-rich repeat receptor protein kinase EMS1 239 334 - -
Prci2g2406 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 785 1015 - -
Prci2g2406 1018 FunFam Leucine-rich repeat receptor protein kinase EMS1 145 238 - -
Prci2g2406 1018 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515
Prci2g2406 1018 Gene3D Ribonuclease Inhibitor 334 648 IPR032675 -
Prci2g2406 1018 PRINTS Leucine-rich repeat signature 590 603 - -
Prci2g2406 1018 PRINTS Leucine-rich repeat signature 569 582 - -
Prci2g2406 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Prci2g2406 1018 FunFam Leucine-rich repeat receptor-like kinase 38 144 - -
Prci2g2406 1018 ProSitePatterns Protein kinases ATP-binding region signature. 709 732 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2406 Prci-Chr2 19266191 19269621 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2406 34 1010 Receptor kinase-like Gene Family AT3G47570 44.411 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci2g2406 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2406 - - ahf:112766919 1054.28