Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2319 ATGTATCCAGAATTTGAAAAGTTTCGGGATGGCTATGCCAGCATTGAAAACTATGATGATCGAGGATATGATAAAGGTGGTAGGTTTGGGGGACATGATCGTGATGACTATTCATATGATGATTATAGCTATAGGTCTCGTGTGTCCCATCATTATAGGGAGGATAGCCATGAGAGGGACATTGATCATGGCCGTCATAGTCATGATTCTGATTATGGGAAAGGTAGAAAAGATAGCAGTTGGAGGCGACGTGAATCTCGTGACCGGGAACATGATAGAAGATATCCAAGCAGGGAAAGAGATTTGAGTCCACGTAGGAGGCATGAGCAGTCTCAATCCCGTTCCCGGTCTCGCTCTCGATCCCGGTCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAGCCATGCTGATAGTCGATATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGCGACGTGAGCATTATTCAGTGGCTCCCTCTGCTACTGTTGTTGTAAAAGGTCTTTCACAAAATGCCAATGAAGAAGATCTATACCAGATTCTTGCAGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCGATGATGGATAAACTTGGGGATGATGGTCTCGTTGTGGACGGTAGAAGGCTCTTCTTTGAGTATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGCCATAATCATAAAAGCATTACAGTACCATCTGACTGGATGTGCACCATATGTGGCTACATCAATTTTGCCCGGCGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACGCTGTCAAATCCGACAGCCTTGGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAGAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACGAATGGAACAACCCTCGAGAAGAATGGACAGATTCTTAGAGTAGCATATGCAAAAAGTATCCTTGGTCCTGGATCAGGAACATCAGGTCCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCAACATTTTCTCAGCAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCAGATGACAAACAATCCACTGGTCACGAGCAAACTGGTGCAGCTCAGACAGGTGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCGTATGACCACAATACTCAGCAATATATCCCTTGCACTGATCAAACCGAGAATAAAGCACCTAGTAATCAGTCTGAACCTTCCAAGGTGTCTGATAGCTCCACCAGTAAAAAAGTGATTATTTCTGCACCTGCTACTACTGTTGCATCTGCTGAGAAGCCAGCTTCTTTGGCAGATGCAGTCCAGGCAGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTTTGGCTAACAAAAAGAAAATGAATAATGTGTTGACTATGTGGAAGCAGAGGAGTCATGAGGGTCAAGCTACTCGTGTAGCTCTGGAAGACAATCACCAATCCACATCCATTGATGATAGGTCATCTTCTGGATATCCGACAAAGAGCAAGTTCAAAAATGAGACTACAGCTACAAGGGAGAATAATGCATCTACTTCAGGGATTTCCACGGCCCCTGCTTCTCAGGCCGTTGCTTCAGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATCAAATCTGATAGTTCTTACTCGGGAACTACAGCTTCAGCTGCTGCATGTGCATCAGGGGCATCTTCATCAAATGCAGACGCTCCAACAGTTGCAACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCATATGCTACACCTGTCGCTAGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCTCCCAAGGAACAACCTCAAACTACCTATAGGGATCGTGCAGCAGAGAGAAGAAGTTTGTATGGTTCATCATTATCAGTCGGGGATGATTTGGCTGATCTGGAATCTGGGGATTCAAATCGAGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATGCCAACCTTGATACCTACGAGGTGATTACAGCTGATAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGTCTAGGTAAGGATGGGAGTGGAATGACAGAGCCTGTGCAGGCACAAGCCACAGAAAGTAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGATCCTAGCCTTGAGGTTCAGGCAGGTGATAGTTACAAGACGCTTATTCACAAGAAAGCACTTGCCAGATTTTGGGATATGTCATAG 2862 0.456 MYPEFEKFRDGYASIENYDDRGYDKGGRFGGHDRDDYSYDDYSYRSRVSHHYREDSHERDIDHGRHSHDSDYGKGRKDSSWRRRESRDREHDRRYPSRERDLSPRRRHEQSQSRSRSRSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSHADSRYERSEKRRDREEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSTGHEQTGAAQTGALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENKAPSNQSEPSKVSDSSTSKKVIISAPATTVASAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSSGYPTKSKFKNETTATRENNASTSGISTAPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSYSGTTASAAACASGASSSNADAPTVATPFRTDVSALGSYATPVASGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDDLADLESGDSNRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQATESRAGLGSQQKKLDPSLEVQAGDSYKTLIHKKALARFWDMS 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2319 953 ProSitePatterns Zinc finger RanBP2-type signature. 299 318 IPR001876 -
Prci2g2319 953 Gene3D - 293 325 - -
Prci2g2319 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 418 IPR000504 GO:0003723
Prci2g2319 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 251 IPR000504 GO:0003723
Prci2g2319 953 MobiDBLite consensus disorder prediction 642 717 - -
Prci2g2319 953 MobiDBLite consensus disorder prediction 132 183 - -
Prci2g2319 953 ProSiteProfiles G-patch domain profile. 877 923 IPR000467 GO:0003676
Prci2g2319 953 SUPERFAMILY RNA-binding domain, RBD 348 438 IPR035979 GO:0003676
Prci2g2319 953 MobiDBLite consensus disorder prediction 896 927 - -
Prci2g2319 953 MobiDBLite consensus disorder prediction 659 713 - -
Prci2g2319 953 MobiDBLite consensus disorder prediction 16 183 - -
Prci2g2319 953 SUPERFAMILY RNA-binding domain, RBD 184 286 IPR035979 GO:0003676
Prci2g2319 953 MobiDBLite consensus disorder prediction 776 807 - -
Prci2g2319 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 269 IPR000504 GO:0003723
Prci2g2319 953 CDD RRM1_RRM2_RBM5_like 348 428 - -
Prci2g2319 953 ProSiteProfiles Zinc finger RanBP2 type profile. 295 324 IPR001876 -
Prci2g2319 953 PANTHER RNA-BINDING PROTEIN 87 949 - -
Prci2g2319 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 430 IPR000504 GO:0003723
Prci2g2319 953 SMART rrm1_1 351 426 IPR000504 GO:0003723
Prci2g2319 953 SMART rrm1_1 190 265 IPR000504 GO:0003723
Prci2g2319 953 Pfam OCRE domain 495 543 IPR041591 -
Prci2g2319 953 SUPERFAMILY Ran binding protein zinc finger-like 289 325 IPR036443 -
Prci2g2319 953 CDD OCRE_SUA_like 493 544 IPR035623 -
Prci2g2319 953 MobiDBLite consensus disorder prediction 644 658 - -
Prci2g2319 953 MobiDBLite consensus disorder prediction 117 131 - -
Prci2g2319 953 Gene3D - 340 486 IPR012677 -
Prci2g2319 953 Gene3D - 154 292 IPR012677 -
Prci2g2319 953 SMART G-patch_5 875 921 IPR000467 GO:0003676
Prci2g2319 953 MobiDBLite consensus disorder prediction 546 569 - -
Prci2g2319 953 SMART zf_4 297 321 IPR001876 -
Prci2g2319 953 MobiDBLite consensus disorder prediction 466 490 - -
Prci2g2319 953 MobiDBLite consensus disorder prediction 905 927 - -
Prci2g2319 953 MobiDBLite consensus disorder prediction 822 850 - -
Prci2g2319 953 MobiDBLite consensus disorder prediction 16 116 - -
Prci2g2319 953 Pfam G-patch domain 878 919 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2319 Prci-Chr2 18304968 18312833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2319 856 922 C2H2 Transcription Factor Family AT5G26610 41.791 1.42e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2319 K13094 - gmx:100777686 1310.82