Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2316 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGCTATGGTGCGGCTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGATGAAAGGAGGTTTGTAGATGAAAGGTATTCAAGGGATAATATATACCAGAGAGGTGCCTTCCACCGTGATGCTTTGGATAGGGAGGCATATCCTCCATCAGGATCTGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGATGAAGAGTATTTGCTGGACAGGGAGTCTAGACGTCTTCAGAGGCCTTATTATGATTCATACCATCAGATTGATGCTTTCAGAGACAGGGAGGTTGACATGTATCCAGAATTTGAAAAGTTTCGGGATGGCTATGCCAGCATTGAAAACTATGATGATCGAGGATATGATAAAGGTGGTAGGTTTGGGGGACATGATCGTGATGACTATTCATATGATGATTATAGCTATAGGTCTCGTGTGTCCCATCATTATAGGGAGGATAGCCATGAGAGGGACATTGATCATGGCCGTCATAGTCATGATTCTGATTATGGGAAAGGTAGAAAAGATAGCAGTTGGAGGCGACGTGAATCTCGTGACCGGGAACATGATAGAAGATATCCAAGCAGGGAAAGAGATTTGAGTCCACGTAGGAGGCATGAGCAGTCTCAATCCCGTTCCCGGTCTCGCTCTCGATCCCGGTCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAGCCATGCTGATAGTCGATATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGCGACGTGAGCATTATTCAGTGGCTCCCTCTGCTACTGTTGTTGTAAAAGGTCTTTCACAAAATGCCAATGAAGAAGATCTATACCAGATTCTTGCAGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCGATGATGGATAAACTTGGGGATGATGGTCTCGTTGTGGACGGTAGAAGGCTCTTCTTTGAGTATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGCCATAATCATAAAAGCATTACAGTACCATCTGACTGGATGTGCACCATATGTGGCTACATCAATTTTGCCCGGCGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACGCTGTCAAATCCGACAGCCTTGGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAGAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACGAATGGAACAACCCTCGAGAAGAATGGACAGATTCTTAGAGTAGCATATGCAAAAAGTATCCTTGGTCCTGGATCAGGAACATCAGGTCCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCAACATTTTCTCAGCAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCAGATGACAAACAATCCACTGGTCACGAGCAAACTGGTGCAGCTCAGACAGGTGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCGTATGACCACAATACTCAGCAATATATCCCTTGCACTGATCAAACCGAGAATAAAGCACCTAGTAATCAGTCTGAACCTTCCAAGGTGTCTGATAGCTCCACCAGTAAAAAAGTGATTATTTCTGCACCTGCTACTACTGTTGCATCTGCTGAGAAGCCAGCTTCTTTGGCAGATGCAGTCCAGGCAGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTTTGGCTAACAAAAAGAAAATGAATAATGTGTTGACTATGTGGAAGCAGAGGAGTCATGAGGGTCAAGCTACTCGTGTAGCTCTGGAAGACAATCACCAATCCACATCCATTGATGATAGGTCATCTTCTGGATATCCGACAAAGAGCAAGTTCAAAAATGAGACTACAGCTACAAGGGAGAATAATGCATCTACTTCAGGGATTTCCACGGCCCCTGCTTCTCAGGCCGTTGCTTCAGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATCAAATCTGATAGTTCTTACTCGGGAACTACAGCTTCAGCTGCTGCATGTGCATCAGGGGCATCTTCATCAAATGCAGACGCTCCAACAGTTGCAACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCATATGCTACACCTGTCGCTAGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCTCCCAAGGAACAACCTCAAACTACCTATAGGGATCGTGCAGCAGAGAGAAGAAGTTTGTATGGTTCATCATTATCAGTCGGGGATGATTTGGCTGATCTGGAATCTGGGGATTCAAATCGAGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATGCCAACCTTGATACCTACGAGGTGATTACAGCTGATAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGTCTAGGTAAGGATGGGAGTGGAATGACAGAGCCTGTGCAGGCACAAGCCACAGAAAGTAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGATCCTAGCCTTGAGGTTCAGGCAGGTGATAGTTACAAGACGCTTATTCACAAGAAAGCACTTGCCAGATTTTGGGATATGTCATAG 3213 0.4572 MDPARYGLHQGWDNNSALEGYGAAHEPNYRVGGSYDERRFVDERYSRDNIYQRGAFHRDALDREAYPPSGSAVGHWSESKRRGYDEEYLLDRESRRLQRPYYDSYHQIDAFRDREVDMYPEFEKFRDGYASIENYDDRGYDKGGRFGGHDRDDYSYDDYSYRSRVSHHYREDSHERDIDHGRHSHDSDYGKGRKDSSWRRRESRDREHDRRYPSRERDLSPRRRHEQSQSRSRSRSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSHADSRYERSEKRRDREEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSTGHEQTGAAQTGALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENKAPSNQSEPSKVSDSSTSKKVIISAPATTVASAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSSGYPTKSKFKNETTATRENNASTSGISTAPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSYSGTTASAAACASGASSSNADAPTVATPFRTDVSALGSYATPVASGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDDLADLESGDSNRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQATESRAGLGSQQKKLDPSLEVQAGDSYKTLIHKKALARFWDMS 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2316 1070 PANTHER RNA-BINDING PROTEIN 204 1066 - -
Prci2g2316 1070 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 547 IPR000504 GO:0003723
Prci2g2316 1070 Pfam OCRE domain 612 660 IPR041591 -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 133 233 - -
Prci2g2316 1070 SMART zf_4 414 438 IPR001876 -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 1022 1044 - -
Prci2g2316 1070 Gene3D - 238 389 IPR012677 -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 894 924 - -
Prci2g2316 1070 ProSiteProfiles G-patch domain profile. 994 1040 IPR000467 GO:0003676
Prci2g2316 1070 MobiDBLite consensus disorder prediction 133 300 - -
Prci2g2316 1070 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Prci2g2316 1070 SMART rrm1_1 468 543 IPR000504 GO:0003723
Prci2g2316 1070 SMART rrm1_1 307 382 IPR000504 GO:0003723
Prci2g2316 1070 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 368 IPR000504 GO:0003723
Prci2g2316 1070 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 535 IPR000504 GO:0003723
Prci2g2316 1070 Pfam G-patch domain 995 1036 IPR000467 GO:0003676
Prci2g2316 1070 CDD OCRE_SUA_like 610 661 IPR035623 -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 663 686 - -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 234 248 - -
Prci2g2316 1070 SUPERFAMILY RNA-binding domain, RBD 301 403 IPR035979 GO:0003676
Prci2g2316 1070 MobiDBLite consensus disorder prediction 761 775 - -
Prci2g2316 1070 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Prci2g2316 1070 CDD RRM1_RRM2_RBM5_like 465 545 - -
Prci2g2316 1070 SUPERFAMILY Ran binding protein zinc finger-like 406 442 IPR036443 -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 1013 1044 - -
Prci2g2316 1070 SMART G-patch_5 992 1038 IPR000467 GO:0003676
Prci2g2316 1070 Gene3D - 457 603 IPR012677 -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 249 300 - -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 583 607 - -
Prci2g2316 1070 Gene3D - 407 442 - -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 776 830 - -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 939 967 - -
Prci2g2316 1070 MobiDBLite consensus disorder prediction 759 834 - -
Prci2g2316 1070 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
Prci2g2316 1070 SUPERFAMILY RNA-binding domain, RBD 465 555 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2316 Prci-Chr2 18304212 18312833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2316 973 1039 C2H2 Transcription Factor Family AT5G26610 41.791 1.67e-09 58.5