Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2315 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGCTATGGTGCGGCTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGATGAAAGGAGGTTTGTAGATGAAAGGTATTCAAGGGATAATATATACCAGAGAGGTGCCTTCCACCGTGATGCTTTGGATAGGGAGGCATATCCTCCATCAGGATCTGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGATGAAGAGTATTTGCTGGACAGGGAGTCTAGACGTCTTCAGAGGCCTTATTATGATTCATACCATCAGATTGATGCTTTCAGAGACAGGGAGGTTGACATGTATCCAGAATTTGAAAAGTTTCGGGATGGCTATGCCAGCATTGAAAACTATGATGATCGAGGATATGATAAAGGTGGTAGGTTTGGGGGACATGATCGTGATGACTATTCATATGATGATTATAGCTATAGGTCTCGTGTGTCCCATCATTATAGGGAGGATAGCCATGAGAGGGACATTGATCATGGCCGTCATAGTCATGATTCTGATTATGGGAAAGGTAGAAAAGATAGCAGTTGGAGGCGACGTGAATCTCGTGACCGGGAACATGATAGAAGATATCCAAGCAGGGAAAGAGATTTGAGTCCACGTAGGAGGCATGAGCAGTCTCAATCCCGTTCCCGGTCTCGCTCTCGATCCCGGTCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAGCCATGCTGATAGTCGATATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGCGACGTGAGCATTATTCAGTGGCTCCCTCTGCTACTGTTGTTGTAAAAGGTCTTTCACAAAATGCCAATGAAGAAGATCTATACCAGATTCTTGCAGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCGATGATGGATAAACTTGGGGATGATGGTCTCGTTGTGGACGGTAGAAGGCTCTTCTTTGAGTATAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGCCATAATCATAAAAGCATTACAGTACCATCTGACTGGATGTGCACCATATGTGGCTACATCAATTTTGCCCGGCGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACGCTGTCAAATCCGACAGCCTTGGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAGAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACGAATGGAACAACCCTCGAGAAGAATGGACAGATTCTTAGAGTAGCATATGCAAAAAGTATCCTTGGTCCTGGATCAGGAACATCAGGTCCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCAACATTTTCTCAGCAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCAGATGACAAACAATCCACTGGTCACGAGCAAACTGGTGCAGCTCAGACAGGTGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCGTATGACCACAATACTCAGCAATATATCCCTTGCACTGATCAAACCGAGAATAAAGCACCTAGTAATCAGTCTGAACCTTCCAAGGTGTCTGATAGCTCCACCAGTAAAAAAGTGATTATTTCTGCACCTGCTACTACTGTTGCATCTGCTGAGAAGCCAGCTTCTTTGGCAGATGCAGTCCAGGCAGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTTTGGCTAACAAAAAGAAAATGAATAATGTGTTGACTATGTGGAAGCAGAGGAGTCATGAGGGTCAAGCTACTCGTGTAGCTCTGGAAGACAATCACCAATCCACATCCATTGATGATAGGTCATCTTCTGGATATCCGACAAAGAGCAAGTTCAAAAATGAGACTACAGCTACAAGGGAGAATAATGCATCTACTTCAGGGATTTCCACGGCCCCTGCTTCTCAGGCCGTTGCTTCAGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATCAAATCTGATAGTTCTTACTCGGGAACTACAGCTTCAGCTGCTGCATGTGCATCAGGGGCATCTTCATCAAATGCAGACGCTCCAACAGTTGCAACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCATATGCTACACCTGTCGCTAGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCTCCCAAGGAACAACCTCAAACTACCTATAGGGATCGTGCAGCAGAGAGAAGAAGTTTGTATGGTTCATCATTATCAGTCGGGGATGATTTGGCTGATCTGGAATCTGGGGATTCAAATCGAGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATGCCAACCTTGATACCTACGAGGTGATTACAGCTGATAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGTCTAGGTAAGGATGGGAGTGGAATGACAGAGCCTGTGCAGGCACAAGCCACAGAAAGTAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGATCCTAGCCTTGAGGTTCAGGCAGGTGATAGTTACAAGACGCTTATTCACAAGAAAGCACTTGCCAGATTTTGGGATATGTCATAG 3210 0.4573 MDPARYGLHQGWDNNSALEGYGAAHEPNYRVGGSYDERRFVDERYSRDNIYQRGAFHRDALDREAYPPSGSAVGHWSESKRRGYDEEYLLDRESRRLQRPYYDSYHQIDAFRDREVDMYPEFEKFRDGYASIENYDDRGYDKGGRFGGHDRDDYSYDDYSYRSRVSHHYREDSHERDIDHGRHSHDSDYGKGRKDSSWRRRESRDREHDRRYPSRERDLSPRRRHEQSQSRSRSRSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSHADSRYERSEKRRDREEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSTGHEQTGAAQTGALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENKAPSNQSEPSKVSDSSTSKKVIISAPATTVASAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSSGYPTKSKFKNETTATRENNASTSGISTAPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSYSGTTASAAACASGASSSNADAPTVATPFRTDVSALGSYATPVASGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDDLADLESGDSNRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQATESRAGLGSQQKKLDPSLEVQAGDSYKTLIHKKALARFWDMS 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2315 1069 CDD RRM1_RRM2_RBM5_like 464 544 - -
Prci2g2315 1069 Gene3D - 456 602 IPR012677 -
Prci2g2315 1069 Gene3D - 271 408 IPR012677 -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 1012 1042 - -
Prci2g2315 1069 Pfam G-patch domain 994 1035 IPR000467 GO:0003676
Prci2g2315 1069 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 368 IPR000504 GO:0003723
Prci2g2315 1069 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 468 534 IPR000504 GO:0003723
Prci2g2315 1069 MobiDBLite consensus disorder prediction 133 233 - -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 662 685 - -
Prci2g2315 1069 SUPERFAMILY Ran binding protein zinc finger-like 405 441 IPR036443 -
Prci2g2315 1069 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 546 IPR000504 GO:0003723
Prci2g2315 1069 MobiDBLite consensus disorder prediction 775 829 - -
Prci2g2315 1069 Gene3D - 409 441 - -
Prci2g2315 1069 Pfam OCRE domain 611 659 IPR041591 -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 758 833 - -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 133 300 - -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 938 966 - -
Prci2g2315 1069 CDD OCRE_SUA_like 609 660 IPR035623 -
Prci2g2315 1069 ProSitePatterns Zinc finger RanBP2-type signature. 415 434 IPR001876 -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 582 606 - -
Prci2g2315 1069 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Prci2g2315 1069 ProSiteProfiles G-patch domain profile. 993 1039 IPR000467 GO:0003676
Prci2g2315 1069 SMART rrm1_1 307 382 IPR000504 GO:0003723
Prci2g2315 1069 SMART rrm1_1 467 542 IPR000504 GO:0003723
Prci2g2315 1069 MobiDBLite consensus disorder prediction 234 248 - -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 1021 1042 - -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 249 300 - -
Prci2g2315 1069 SUPERFAMILY RNA-binding domain, RBD 301 401 IPR035979 GO:0003676
Prci2g2315 1069 MobiDBLite consensus disorder prediction 892 923 - -
Prci2g2315 1069 ProSiteProfiles Zinc finger RanBP2 type profile. 411 440 IPR001876 -
Prci2g2315 1069 PANTHER RNA-BINDING PROTEIN 204 1065 - -
Prci2g2315 1069 SMART zf_4 413 437 IPR001876 -
Prci2g2315 1069 MobiDBLite consensus disorder prediction 760 774 - -
Prci2g2315 1069 SMART G-patch_5 991 1037 IPR000467 GO:0003676
Prci2g2315 1069 SUPERFAMILY RNA-binding domain, RBD 464 554 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2315 Prci-Chr2 18304211 18312833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2315 972 1038 C2H2 Transcription Factor Family AT5G26610 41.791 1.71e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2315 K13094 - gmx:100787998 1511.12