Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2314 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGCTATGGTGCGGCTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGATGAAAGGAGGTTTGTAGATGAAAGGTATTCAAGGGATAATATATACCAGAGAGGTGCCTTCCACCGTGATGCTTTGGATAGGGAGGCATATCCTCCATCAGGATCTGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGATGAAGAGTATTTGCTGGACAGGGAGTCTAGACGTCTTCAGAGGCCTTATTATGATTCATACCATCAGATTGATGCTTTCAGAGACAGGGAGGTTGACATGTATCCAGAATTTGAAAAGTTTCGGGATGGCTATGCCAGCATTGAAAACTATGATGATCGAGGATATGATAAAGGTGGTAGGTTTGGGGGACATGATCGTGATGACTATTCATATGATGATTATAGCTATAGGTCTCGTGTGTCCCATCATTATAGGGAGGATAGCCATGAGAGGGACATTGATCATGGCCGTCATAGTCATGATTCTGATTATGGGAAAGGTAGAAAAGATAGCAGTTGGAGGCGACGTGAATCTCGTGACCGGGAACATGATAGAAGATATCCAAGCAGGGAAAGAGATTTGAGTCCACGTAGGAGGCATGAGCAGTCTCAATCCCGTTCCCGGTCTCGCTCTCGATCCCGGTCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAGCCATGCTGATAGTCGATATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGCGACGTGAGCATTATTCAGTGGCTCCCTCTGCTACTGTTGTTGTAAAAGGTCTTTCACAAAATGCCAATGAAGAAGATCTATACCAGATTCTTGCAGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCGATGATGGATAAACTTGGGGATGATGGTCTCGTTGTGGACGGTAGAAGGCTCTTCTTTGAGTATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGCCATAATCATAAAAGCATTACAGTACCATCTGACTGGATGTGCACCATATGTGGCTACATCAATTTTGCCCGGCGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACGCTGTCAAATCCGACAGCCTTGGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAGAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACGAATGGAACAACCCTCGAGAAGAATGGACAGATTCTTAGAGTAGCATATGCAAAAAGTATCCTTGGTCCTGGATCAGGAACATCAGGTCCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCAACATTTTCTCAGCAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCAGATGACAAACAATCCACTGGTCACGAGCAAACTGGTGCAGCTCAGACAGGTGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCGTATGACCACAATACTCAGCAATATATCCCTTGCACTGATCAAACCGAGAATAAAGCACCTAGTAATCAGTCTGAACCTTCCAAGGTGTCTGATAGCTCCACCAGTAAAAAAGTGATTATTTCTGCACCTGCTACTACTGTTGCATCTGCTGAGAAGCCAGCTTCTTTGGCAGATGCAGTCCAGGCAGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTTTGGCTAACAAAAAGAAAATGAATAATGTGTTGACTATGTGGAAGCAGAGGAGTCATGAGGGTCAAGCTACTCGTGTAGCTCTGGAAGACAATCACCAATCCACATCCATTGATGATAGGTCATCTTCTGGATATCCGACAAAGAGCAAGTTCAAAAATGAGACTACAGCTACAAGGGAGAATAATGCATCTACTTCAGGGATTTCCACGGCCCCTGCTTCTCAGGCCGTTGCTTCAGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATCAAATCTGATAGTTCTTACTCGGGAACTACAGCTTCAGCTGCTGCATGTGCATCAGGGGCATCTTCATCAAATGCAGACGCTCCAACAGTTGCAACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCATATGCTACACCTGTCGCTAGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCTCCCAAGGAACAACCTCAAACTACCTATAGGGATCGTGCAGCAGAGAGAAGAAGTTTGTATGGTTCATCATTATCAGTCGGGGATGATTTGGCTGATCTGGAATCTGGGGATTCAAATATCTGCAGCAAAAGGAAGCTAAACAAAATCGAGTTTATGTATTAA 2901 0.4516 MDPARYGLHQGWDNNSALEGYGAAHEPNYRVGGSYDERRFVDERYSRDNIYQRGAFHRDALDREAYPPSGSAVGHWSESKRRGYDEEYLLDRESRRLQRPYYDSYHQIDAFRDREVDMYPEFEKFRDGYASIENYDDRGYDKGGRFGGHDRDDYSYDDYSYRSRVSHHYREDSHERDIDHGRHSHDSDYGKGRKDSSWRRRESRDREHDRRYPSRERDLSPRRRHEQSQSRSRSRSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSHADSRYERSEKRRDREEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSTGHEQTGAAQTGALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENKAPSNQSEPSKVSDSSTSKKVIISAPATTVASAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSSGYPTKSKFKNETTATRENNASTSGISTAPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSYSGTTASAAACASGASSSNADAPTVATPFRTDVSALGSYATPVASGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDDLADLESGDSNICSKRKLNKIEFMY 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2314 966 SUPERFAMILY Ran binding protein zinc finger-like 406 442 IPR036443 -
Prci2g2314 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 547 IPR000504 GO:0003723
Prci2g2314 966 Pfam OCRE domain 612 660 IPR041591 -
Prci2g2314 966 MobiDBLite consensus disorder prediction 133 233 - -
Prci2g2314 966 SMART zf_4 414 438 IPR001876 -
Prci2g2314 966 MobiDBLite consensus disorder prediction 895 928 - -
Prci2g2314 966 MobiDBLite consensus disorder prediction 133 300 - -
Prci2g2314 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Prci2g2314 966 SMART rrm1_1 468 543 IPR000504 GO:0003723
Prci2g2314 966 SMART rrm1_1 307 382 IPR000504 GO:0003723
Prci2g2314 966 PANTHER RNA-BINDING PROTEIN 204 937 - -
Prci2g2314 966 CDD OCRE_SUA_like 610 661 IPR035623 -
Prci2g2314 966 MobiDBLite consensus disorder prediction 663 686 - -
Prci2g2314 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 368 IPR000504 GO:0003723
Prci2g2314 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 535 IPR000504 GO:0003723
Prci2g2314 966 MobiDBLite consensus disorder prediction 234 248 - -
Prci2g2314 966 MobiDBLite consensus disorder prediction 761 775 - -
Prci2g2314 966 SUPERFAMILY RNA-binding domain, RBD 301 403 IPR035979 GO:0003676
Prci2g2314 966 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Prci2g2314 966 Gene3D - 410 442 - -
Prci2g2314 966 CDD RRM1_RRM2_RBM5_like 465 545 - -
Prci2g2314 966 SUPERFAMILY RNA-binding domain, RBD 465 555 IPR035979 GO:0003676
Prci2g2314 966 MobiDBLite consensus disorder prediction 249 300 - -
Prci2g2314 966 MobiDBLite consensus disorder prediction 583 607 - -
Prci2g2314 966 Gene3D - 271 409 IPR012677 -
Prci2g2314 966 Gene3D - 457 603 IPR012677 -
Prci2g2314 966 MobiDBLite consensus disorder prediction 776 830 - -
Prci2g2314 966 MobiDBLite consensus disorder prediction 759 834 - -
Prci2g2314 966 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2314 Prci-Chr2 18304208 18311702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2314 305 531 Eukaryotic Initiation Factors Gene Family AT2G36660 25.197 3.12e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2314 K13094 - gmx:100787998 1314.67