Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2313 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGCTATGGTGCGGCTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGATGAAAGGAGGTTTGTAGATGAAAGGTATTCAAGGGATAATATATACCAGAGAGGTGCCTTCCACCGTGATGCTTTGGATAGGGAGGCATATCCTCCATCAGGATCTGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGATGAAGAGTATTTGCTGGACAGGGAGTCTAGACGTCTTCAGAGGCCTTATTATGATTCATACCATCAGATTGATGCTTTCAGAGACAGGGAGGTTGACATGTATCCAGAATTTGAAAAGTTTCGGGATGGCTATGCCAGCATTGAAAACTATGATGATCGAGGATATGATAAAGGTGGTAGGTTTGGGGGACATGATCGTGATGACTATTCATATGATGATTATAGCTATAGGTCTCGTGTGTCCCATCATTATAGGGAGGATAGCCATGAGAGGGACATTGATCATGGCCGTCATAGTCATGATTCTGATTATGGGAAAGGTAGAAAAGATAGCAGTTGGAGGCGACGTGAATCTCGTGACCGGGAACATGATAGAAGATATCCAAGCAGGGAAAGAGATTTGAGTCCACGTAGGAGGCATGAGCAGTCTCAATCCCGTTCCCGGTCTCGCTCTCGATCCCGGTCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAGCCATGCTGATAGTCGATATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGCGACGTGAGCATTATTCAGTGGCTCCCTCTGCTACTGTTGTTGTAAAAGGTCTTTCACAAAATGCCAATGAAGAAGATCTATACCAGATTCTTGCAGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCGATGATGGATAAACTTGGGGATGATGGTCTCGTTGTGGACGGTAGAAGGCTCTTCTTTGAGTATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGCCATAATCATAAAAGCATTACAGTACCATCTGACTGGATGTGCACCATATGTGGCTACATCAATTTTGCCCGGCGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACGCTGTCAAATCCGACAGCCTTGGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAGAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACGAATGGAACAACCCTCGAGAAGAATGGACAGATTCTTAGAGTAGCATATGCAAAAAGTATCCTTGGTCCTGGATCAGGAACATCAGGTCCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCAACATTTTCTCAGCAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCAGATGACAAACAATCCACTGGTCACGAGCAAACTGGTGCAGCTCAGACAGGTGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCGTATGACCACAATACTCAGCAATATATCCCTTGCACTGATCAAACCGAGAATAAAGCACCTAGTAATCAGTCTGAACCTTCCAAGGTGTCTGATAGCTCCACCAGTAAAAAAGTGATTATTTCTGCACCTGCTACTACTGTTGCATCTGCTGAGAAGCCAGCTTCTTTGGCAGATGCAGTCCAGGCAGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTTTGGCTAACAAAAAGAAAATGAATAATGTGTTGACTATGTGGAAGCAGAGGAGTCATGAGGGTCAAGCTACTCGTGTAGCTCTGGAAGACAATCACCAATCCACATCCATTGATGATAGGTCATCTTCTGGATATCCGACAAAGAGCAAGTTCAAAAATGAGACTACAGCTACAAGGGAGAATAATGCATCTACTTCAGGGATTTCCACGGCCCCTGCTTCTCAGGCCGTTGCTTCAGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATCAAATCTGATAGTTCTTACTCGGGAACTACAGCTTCAGCTGCTGCATGTGCATCAGGGGCATCTTCATCAAATGCAGACGCTCCAACAGTTGCAACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCATATGCTACACCTGTCGCTAGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCTCCCAAGGAACAACCTCAAACTACCTATAGGGATCGTGCAGCAGAGAGAAGAAGTTTGTATGGTTCATCATTATCAGTCGGGGATGATTTGGCTGATCTGGAATCTGGGGATTCAAGGTCTAGGTAA 2865 0.4541 MDPARYGLHQGWDNNSALEGYGAAHEPNYRVGGSYDERRFVDERYSRDNIYQRGAFHRDALDREAYPPSGSAVGHWSESKRRGYDEEYLLDRESRRLQRPYYDSYHQIDAFRDREVDMYPEFEKFRDGYASIENYDDRGYDKGGRFGGHDRDDYSYDDYSYRSRVSHHYREDSHERDIDHGRHSHDSDYGKGRKDSSWRRRESRDREHDRRYPSRERDLSPRRRHEQSQSRSRSRSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSHADSRYERSEKRRDREEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSTGHEQTGAAQTGALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENKAPSNQSEPSKVSDSSTSKKVIISAPATTVASAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSSGYPTKSKFKNETTATRENNASTSGISTAPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSYSGTTASAAACASGASSSNADAPTVATPFRTDVSALGSYATPVASGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDDLADLESGDSRSR 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2313 954 SUPERFAMILY Ran binding protein zinc finger-like 406 442 IPR036443 -
Prci2g2313 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 547 IPR000504 GO:0003723
Prci2g2313 954 Pfam OCRE domain 612 660 IPR041591 -
Prci2g2313 954 MobiDBLite consensus disorder prediction 133 233 - -
Prci2g2313 954 SMART zf_4 414 438 IPR001876 -
Prci2g2313 954 SUPERFAMILY RNA-binding domain, RBD 301 403 IPR035979 GO:0003676
Prci2g2313 954 MobiDBLite consensus disorder prediction 133 300 - -
Prci2g2313 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Prci2g2313 954 SUPERFAMILY RNA-binding domain, RBD 465 555 IPR035979 GO:0003676
Prci2g2313 954 Gene3D - 272 409 IPR012677 -
Prci2g2313 954 Gene3D - 457 603 IPR012677 -
Prci2g2313 954 SMART rrm1_1 468 543 IPR000504 GO:0003723
Prci2g2313 954 SMART rrm1_1 307 382 IPR000504 GO:0003723
Prci2g2313 954 CDD OCRE_SUA_like 610 661 IPR035623 -
Prci2g2313 954 MobiDBLite consensus disorder prediction 663 686 - -
Prci2g2313 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 535 IPR000504 GO:0003723
Prci2g2313 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 368 IPR000504 GO:0003723
Prci2g2313 954 MobiDBLite consensus disorder prediction 234 248 - -
Prci2g2313 954 MobiDBLite consensus disorder prediction 761 775 - -
Prci2g2313 954 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Prci2g2313 954 Gene3D - 410 442 - -
Prci2g2313 954 CDD RRM1_RRM2_RBM5_like 465 545 - -
Prci2g2313 954 PANTHER RNA-BINDING PROTEIN 204 934 - -
Prci2g2313 954 MobiDBLite consensus disorder prediction 249 300 - -
Prci2g2313 954 MobiDBLite consensus disorder prediction 583 607 - -
Prci2g2313 954 MobiDBLite consensus disorder prediction 776 830 - -
Prci2g2313 954 MobiDBLite consensus disorder prediction 759 834 - -
Prci2g2313 954 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
Prci2g2313 954 MobiDBLite consensus disorder prediction 891 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2313 Prci-Chr2 18304208 18312575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2313 305 531 Eukaryotic Initiation Factors Gene Family AT2G36660 25.197 3.84e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2313 K13094 - gmx:100787998 1312.36