Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2308 ATGGTGACGCTATTGAGGAAAATGTGGGAATCTGTATCGAACCGTTCGAGTTCGGGTTCAAATTCCAACTCGCCGGAACGCTTTCGCTGCGTGGATTCACCTCTGGGTGCATTCGAGAAAGTTCCTTTCGATCTATTGATCCAAATCCTGAGGCTTCTGGGTCCCAAAGAAGCTGCGAAATTGAGTCTTGTTTGCAAAGCATGGAGGTCGCTGGCCTCTGATAACCGGCTGTGGATTTATTTCCTTCAGAATTTCCAATTGGAACCATGGGATTCCATTTTTTTCGCCGAGACCAGTTTGAGGTCCGGTCATCCTCTTCCAACCTTAGTTTGTCAGATGCCTCAGTTATCTTTCAAGCGTATATATGGCCAACGAGAACAAGTTCCTGGTGCTCTTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATATGACCGACCATCTGGGCGATCGGCTACCTTTCTGGAATTTGGTAACCTTGAGTTGCCAATGTACACTAGACTTAGACATTTTTTTGCAACCATTTATAGCAGGATGCAGGTTAAACCAAGTACTCAACCCGTCATTGTTTCTATTCCAATATGCCATTATGATGATACAGAATCTTCCAAAGCATCAAGACGGCAGCTTAAGGAGGCAATATGTGCTTCCCTCTTTGACATGAATGTTCCCGCTATTTGTGCTGTCAACCAGGCCACTTTGGCTCTGTATGCCGCAAAACAAACTTCTGGAATAGCTGTTAATGTTGGTTTTCAGGTCACATCTATAGTCCCAATTATGAATGGTAAAGTTATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTTGGAGCAATCAAACTTACAGGTTTCCTTAGGGAGCTGATGCAACGGAACAACATTAATTTTGAATCTTTGTACACCGTTCGCACACTAAAAGAGAAGCTGTGCTATGTAGCTATTGATTATGAAGCTGAACTATCAAAAGATACACAAGCATCGTTTGAAGCAGCAGGGGAAGGATTGTTTACACTTTCAAAAGAGCGGTTTCAAACAGGAGAGATCCTGTTCCAGCCCCGTCTTGCTGGACTGCAAGCAATGGGTTTGCACCAGGCTGTAGCTCTTTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGTGACCCTGATTGGTTTAAGACTGTGGTTTTATCAGGGGGAACAGCATGCTTACCAGGTCTGGCAGAAAGGTTAGATAAGGAACTCCATGAGTTATTACCTCCCCAGTTGTCCAGTGGAATCAAAGTCATTCCTCCTCCATATGGTGCTGATACTGCATGGTTCGGAGCAAGGACTATTGGCAATTTGAGTACCTTTCCTGGTCCTTGGTGTATAAAGAAGAAGCACTTCCATAAGTCTCGACTCAATCTCATATGGTGA 1407 0.4456 MVTLLRKMWESVSNRSSSGSNSNSPERFRCVDSPLGAFEKVPFDLLIQILRLLGPKEAAKLSLVCKAWRSLASDNRLWIYFLQNFQLEPWDSIFFAETSLRSGHPLPTLVCQMPQLSFKRIYGQREQVPGALIIDGGSGYCKFGWSKYDRPSGRSATFLEFGNLELPMYTRLRHFFATIYSRMQVKPSTQPVIVSIPICHYDDTESSKASRRQLKEAICASLFDMNVPAICAVNQATLALYAAKQTSGIAVNVGFQVTSIVPIMNGKVMRKVGVEVVGLGAIKLTGFLRELMQRNNINFESLYTVRTLKEKLCYVAIDYEAELSKDTQASFEAAGEGLFTLSKERFQTGEILFQPRLAGLQAMGLHQAVALCMDHCHSAELAGDPDWFKTVVLSGGTACLPGLAERLDKELHELLPPQLSSGIKVIPPPYGADTAWFGARTIGNLSTFPGPWCIKKKHFHKSRLNLIW 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2308 468 SMART fbox_2 41 81 IPR001810 GO:0005515
Prci2g2308 468 SUPERFAMILY Actin-like ATPase domain 130 251 IPR043129 -
Prci2g2308 468 Gene3D - 35 104 - -
Prci2g2308 468 SMART actin_3 129 459 IPR004000 -
Prci2g2308 468 Pfam F-box-like 41 78 IPR001810 GO:0005515
Prci2g2308 468 Gene3D - 236 434 - -
Prci2g2308 468 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Prci2g2308 468 SUPERFAMILY Actin-like ATPase domain 246 457 IPR043129 -
Prci2g2308 468 CDD NBD_sugar-kinase_HSP70_actin 132 276 - -
Prci2g2308 468 PANTHER ACTIN 177 460 IPR004000 -
Prci2g2308 468 SUPERFAMILY F-box domain 36 94 IPR036047 GO:0005515
Prci2g2308 468 Gene3D Actin; Chain A, domain 4 279 362 - -
Prci2g2308 468 Pfam Actin 178 456 IPR004000 -
Prci2g2308 468 CDD F-box_AtARP8-like 37 81 - -
Prci2g2308 468 Gene3D - 175 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2308 Prci-Chr2 18254330 18265233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2308 178 458 Cytoskeleton Gene Families AT3G12110 31.379 2.67e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2308 K16616 - qsa:O6P43_013433 755.747