Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2307 ATGGTGACGCTATTGAGGAAAATGTGGGAATCTGTATCGAACCGTTCGAGTTCGGGTTCAAATTCCAACTCGCCGGAACGCTTTCGCTGCGTGGATTCACCTCTGGGTGCATTCGAGAAAGTTCCTTTCGATCTATTGATCCAAATCCTGAGGCTTCTGGGTCCCAAAGAAGCTGCGAAATTGAGTCTTGTTTGCAAAGCATGGAGGTCGCTGGCCTCTGATAACCGGCTGTGGATTTATTTCCTTCAGAATTTCCAATTGGAACCATGGGATTCCATTTTTTTCGCCGAGACCAGTTTGAGGTCCGGTCATCCTCTTCCAACCTTAGTTTGTCAGATGCCTCAGTTATCTTTCAAGCGTATATATGGCCAACGAGAACAAGTTCCTGGTGCTCTTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATATGACCGACCATCTGGGCGATCGGCTACCTTTCTGGAATTTGGTAACCTTGAGTTGCCAATGTACACTAGACTTAGACATTTTTTTGCAACCATTTATAGCAGGATGCAGGTTAAACCAAGTACTCAACCCGTCATTGTTTCTATTCCAATATGCCATTATGATGATACAGAATCTTCCAAAGCATCAAGACGGCAGCTTAAGGAGGCAATATGTGCTTCCCTCTTTGACATGAATGTTCCCGCTATTTGTGCTGTCAACCAGGCCACTTTGGCTCTGTATGCCGCAAAACAAACTTCTGGAATAGCTGTTAATGTTGGTTTTCAGGTCACATCTATAGTCCCAATTATGAATGGTAAAGTTATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTTGGAGCAATCAAACTTACAGGTTTCCTTAGGGAGCTGATGCAACGGAACAACATTAATTTTGAATCTTTGTACACCGTTCGCACACTAAAAGAGAAGCTGTGCTATGTAGCTATTGATTATGAAGCTGAACTATCAAAAGATACACAAGCATCGTTTGAAGCAGCAGGGGAAGGATTGTTTACACTTTCAAAAGAGCGGTTTCAAACAGGAGAGATCCTGTTCCAGCCCCGTCTTGCTGGACTGCAAGCAATGGGTTTGCACCAGGCTGTAGCTCTTTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGTGACCCTGATTGGTTTAAGACTGTGGTTTTATCAGGGGGAACAGCATGCTTACCAGGTCTGGCAGCAATCAAACAGGACCTTAAGGTATTGAAAAGACCCTAG 1251 0.446 MVTLLRKMWESVSNRSSSGSNSNSPERFRCVDSPLGAFEKVPFDLLIQILRLLGPKEAAKLSLVCKAWRSLASDNRLWIYFLQNFQLEPWDSIFFAETSLRSGHPLPTLVCQMPQLSFKRIYGQREQVPGALIIDGGSGYCKFGWSKYDRPSGRSATFLEFGNLELPMYTRLRHFFATIYSRMQVKPSTQPVIVSIPICHYDDTESSKASRRQLKEAICASLFDMNVPAICAVNQATLALYAAKQTSGIAVNVGFQVTSIVPIMNGKVMRKVGVEVVGLGAIKLTGFLRELMQRNNINFESLYTVRTLKEKLCYVAIDYEAELSKDTQASFEAAGEGLFTLSKERFQTGEILFQPRLAGLQAMGLHQAVALCMDHCHSAELAGDPDWFKTVVLSGGTACLPGLAAIKQDLKVLKRP 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2307 416 SMART fbox_2 41 81 IPR001810 GO:0005515
Prci2g2307 416 SMART actin_3 129 416 IPR004000 -
Prci2g2307 416 PANTHER ACTIN 177 405 IPR004000 -
Prci2g2307 416 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Prci2g2307 416 Gene3D Actin; Chain A, domain 4 281 359 - -
Prci2g2307 416 Pfam F-box-like 41 78 IPR001810 GO:0005515
Prci2g2307 416 SUPERFAMILY Actin-like ATPase domain 246 405 IPR043129 -
Prci2g2307 416 CDD NBD_sugar-kinase_HSP70_actin 132 276 - -
Prci2g2307 416 Gene3D - 35 104 - -
Prci2g2307 416 SUPERFAMILY F-box domain 36 94 IPR036047 GO:0005515
Prci2g2307 416 SUPERFAMILY Actin-like ATPase domain 130 251 IPR043129 -
Prci2g2307 416 Gene3D - 248 404 - -
Prci2g2307 416 CDD F-box_AtARP8-like 37 81 - -
Prci2g2307 416 Gene3D - 126 245 - -
Prci2g2307 416 Pfam Actin 178 404 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2307 Prci-Chr2 18254327 18264403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2307 178 404 Cytoskeleton Gene Families AT3G12110 30.932 5.42e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2307 K16616 - qsa:O6P43_013433 654.44