Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2301 ATGGGAAGGAGACCGGCCAGGTGTTATCGCCAGATAAAGAACAAGCCATACCCTAAGTCTCGATACTGCCGCGGTGTACCTGACCCAAAGATCAGGATTTATGATGTTGGGATGAAAAAGAAAGGAGTTGATGAGTTCCCATTCTGTGTACATCTTGTATCTTGGGAGAAGGAGAATGTTTCAAGTGAAGCTCTTGAGGCTGCTCGTATAGCTTGCAACAAATACATGGCCAAGTTTGCAGGGAAAGATGCTTTCCACCTGCGAGTTAGGGTTCATCCTTTCCATGTTCTGCGAATCAACAAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACAGGGATGAGAGGTGCTTTTGGGAAGCCACTGGGAACTTGTGCTAGAGTCAACATTGGTCAAGTGCTTCTGTCTGTTCGTTGCAAGGACAGCAACAGTCACCATGCCCAGGAGGCTCTTCGCCGTGCTAAATTCAAGTTTCCCGGTCGCCAGAAGATCATTGTCAGCAGGAAGTGGGGATTTACCAAATTTAGCCGCGCTGACTACCTGAAATTTAAGTCAGAGAATCGAGTTGTGCCAGATGGAGTCAATGCCAAGGTTCTTGGGTGCCATGGACCTTTGGCCTTGCGACAGCCCGGAAGAGCTTTCTTGCCTGCTAAGGCTTGA 663 0.4872 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVNIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENRVVPDGVNAKVLGCHGPLALRQPGRAFLPAKA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2301 220 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Prci2g2301 220 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Prci2g2301 220 FunFam 60S ribosomal protein L10 1 206 - -
Prci2g2301 220 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Prci2g2301 220 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Prci2g2301 220 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Prci2g2301 220 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Prci2g2301 220 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Prci2g2301 220 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2301 Prci-Chr2 18134284 18136274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2301 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.818 1.88e-143 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2301 K02866 - cave:132163527 440.269