Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2299 ATGGCAAAGGGTGGTGCCACCAATACATACGAAGAAGCTCGGAAGCAACGGCTTGCAGAAAACAAAAAACGATTTGAGGATCTTGGGATTTCAAAGATTTCAAAAAATTTATCTGAACTTGTCACACCAGAGAAGAAGGCTCCTCCGCAACGTCGACCAAAACAAAGGTCAAACAGTAATGATGTAGTGGAACCAAGACGCTCTTCTCGTGTGCGAAATGCTGTTCCTTCATATCGTGAGGATGTATTCATGGACCTGCCACCCTTGAGGAAGAGGTCGAGGTCATCTTCATCAGCATGGGGAAGTTATGTTGCAAGGCCACTAGAAGAAATCAAAGAAGCCACAGATGAAGAAAGAAATTGTGCTTTAATGGCAGCAGAGACACTCCTAAGCGATTTACAGACTTCAAATCCAACATTTATTAAATCAATGGTCCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTCCCAACTAGATTTTGTCAAGAACATCTTCCAAAGACCGCTTGTGACATGATTTTAGAGGATGAAAATGGCTCAGAATTTGACGCTGTCTTCCTTGGCAATAGAACCGGGATTAGCGGAGGCTGGAGAGGATTTGCACTGGATCATAAGTTGGATGATGGTGATGCACTCGTTTTTGAGTTAGTTGAACCTGCGAGATTTAAGATTTATATTGTCAAAGCCTTTCCAGAATCAGCTGAAGATGGACAGGAGACTTTGGATGAAGAAGCTGATACTTGTGCAGCCAAGAAGCACAAATCACAATCAAACAGGACACAAATTCTTGAACATGCTGTGCATGAAACTAAAGAATCTGCAAGTTCTCAGGAAAATAATGTTGACAATGAAATCGAGCCACAAGAGCTAAACCCAGCTAGAAATACGAGATTTTCTCAGAGAAAATCTCAGAAAGAATCTAAAGATCGTAAGCTGCTTGTTTCTGGTGGTTCAATAAAGGAAGAAAATATTGAAGAAGGGAAAAGTTGTATGGAGAATGCAAAAGCAGCCATGAAACATAATTCTCAGGGAATCAAGACAAGGTCAAAACGTGGTACGCGAAAATGA 1071 0.4136 MAKGGATNTYEEARKQRLAENKKRFEDLGISKISKNLSELVTPEKKAPPQRRPKQRSNSNDVVEPRRSSRVRNAVPSYREDVFMDLPPLRKRSRSSSSAWGSYVARPLEEIKEATDEERNCALMAAETLLSDLQTSNPTFIKSMVRSHVYSCFWLGLPTRFCQEHLPKTACDMILEDENGSEFDAVFLGNRTGISGGWRGFALDHKLDDGDALVFELVEPARFKIYIVKAFPESAEDGQETLDEEADTCAAKKHKSQSNRTQILEHAVHETKESASSQENNVDNEIEPQELNPARNTRFSQRKSQKESKDRKLLVSGGSIKEENIEEGKSCMENAKAAMKHNSQGIKTRSKRGTRK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2299 356 SMART B3_2 140 231 IPR003340 GO:0003677
Prci2g2299 356 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Prci2g2299 356 MobiDBLite consensus disorder prediction 274 299 - -
Prci2g2299 356 MobiDBLite consensus disorder prediction 300 334 - -
Prci2g2299 356 MobiDBLite consensus disorder prediction 36 74 - -
Prci2g2299 356 Pfam B3 DNA binding domain 140 227 IPR003340 GO:0003677
Prci2g2299 356 MobiDBLite consensus disorder prediction 45 68 - -
Prci2g2299 356 MobiDBLite consensus disorder prediction 268 356 - -
Prci2g2299 356 Gene3D - 114 231 IPR015300 -
Prci2g2299 356 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 37 230 IPR044837 -
Prci2g2299 356 SUPERFAMILY DNA-binding pseudobarrel domain 134 229 IPR015300 -
Prci2g2299 356 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2299 Prci-Chr2 18078034 18082698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2299 10 230 B3 DNA Binding Superfamily AT5G58280 48.996 2.86e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci2g2299 B3 1.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2299 - - pcin:129303902 688.337