Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2238 ATGATGCTTTCAACATCAGGGTTGGTCCAGCACGGACATGAAGTGTTAGGAGGGGAGAAGTGTTTGAATTCGGAGCTGTGGCACGCATGTGCTGGACCCCTGGTATCCCTACCAACTGCGGGTACTCGTGTTGTTTACTTTCCTCAGGGTCATAGCGAGCAGGTTGCGGCCACAACTAACAGGGAAGTTGATGGTCACATACCTAACTATCCAAGCTTGCTACCCCAGTTGATTTGCCAACTTCATAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGAATCTACAACCTCTAACTCTGCAAGAGCAAAAGGAAACTATTCTTCCTATGGAATTGGGCATACCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACAGCGAGTGACACTAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCGGCTGAGAAAGTCTTTCCTCCTCTGGATTACTCACATCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGTCATGTTTTTCGGGGACAGCCAAAACGGCACCTTCTTACAACAGGCTGGAGTGTATATGTTAATGCCAAGAGACTAGTGGCTGGAGATTCTGTGCTTTTTATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGCGCCAATCGACCACAAGCTTTGATGCCTTCATCAGTTCTATCTAGTGATACTATGCACATTGGATTGCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGCTTTACTATCTTCTATAATCCAAGGGCTTGTCCATCATCCGAGTTCGTTATACCTCTTTCAAAATATATCAAAGCTGTGTGCCATACACGTGTTTCAGTTGGTATGCGTTTTAGAATGCTATTTGAGACTGAGGAGTCAAGTGTTCGCAGATATATGGGTACAATAACTGGTATAAGCGATCTGGATCCTGTTCGCTGGCCAAACTCTCACTGGAGATCAGTAAAGGTCGGTTGGGATGAATCGACAGCAGGAGAGAGACGGCCAAGGGTTTCACTCTGGGAAATTGAGCCTTTGACAATATTCCCAATGTATCCATCACTATTTCCCCTCGGATTGAAACGCCCCTCACCTGTCAATGATGTCAGAGATGATGCAAATAATGGGCTAATGTGGCTTAGAGGGGGAGCTGGAGAACATAGTTTAAACTCTTTAAACTTTCAAAGTGGTGGTGTGTTGCCGTGGATGCAGCAGAGGTTGGATCCAACTTTGTTAGGAAATAATCATAATCAGCAGTACCAATCATTGTTAGCGGCTGGTTTGCAGAATCGAGGGAATGGAGATCTATTGAGGCAACAAATGATGCATTTTCAGCAGACTTTCCCTTTTCTTCAACAATCAGGAAACCAAAATCCTTCTTTGCAATTTCAGCAGCAGCAGGCAATTCAGCAATCAACCTCATCCAATAATCTGCAGCCACAAGAACGTGTATTAATGGAGAACTTGTCACAGAACCTTCTTCAGAAATCACATAACATTTACAATCAGGAAGAACAAGCACAGCAGCAGAATAATACTTATCATGATTCAGTCTTGATTCAAAGTGATCAGTTCCTTCAGAGGCAACATTCTAATGTGCCTTCACCATCATATTCAAAGCCGGATTTCTTAGATTCAAGCATGAAGTTCTCTTCATCAGTTTCCCCCATACAAAATGTACCCGCTTCACTGTGCCGTGAAGGGAGTGGTAGTGATATTTTAAACCTATCCAGAACCAGTCAGTCCATGGTGACTGAACAGATGCCCCAACAATCTTGGACATCGTCGATGTATCCACCTATGCAGGTCAAGGCCTTTAGCAATTTGATGTCACATGCACATTATAGTGGAAAAGATTCTTCATCAGTACATCCATATTGTGCTTCAGAGAACCAAAATCCTACTCTTTTTGGTAATAATATCAATTCATCTGGCCTTGTGCTCCCAACTACTGCCACGGGATATGCACCTTCATCTGTTGATACTGATACTTCAACCATGCAAATGGGGGATTCTGGATTTCAGGGTCAACTATATGCTTGCATGCAAGATTCACCAGAGTTATTGCAAAGTTCTGGGCAGGTTGGCCCGCGAAACCAAACCCAGACATTTGTCAAGGTTTACAAATCAGGGTCAGTTGGCCGCTCACTTGATATCTCCCGGTTCAGCAGCTATCATGAACTGAGAGAAGAATTGGCTCAGATGTTTGGAATTGAGGGAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGGATGACATGCTTCTCCTTGGAGATGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCACCTGAAGATATCCAAAAAATGGGAGAGCATGTGGTGGGACTGGAACCCTTAGGTCGCAACGCCGGATAG 2460 0.4398 MMLSTSGLVQHGHEVLGGEKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLLPQLICQLHNVTMHADVETDEVYAQMNLQPLTLQEQKETILPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSHQPPAQELIARDLHDVEWKFRHVFRGQPKRHLLTTGWSVYVNAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQALMPSSVLSSDTMHIGLLAAAAHAAATNSCFTIFYNPRACPSSEFVIPLSKYIKAVCHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERRPRVSLWEIEPLTIFPMYPSLFPLGLKRPSPVNDVRDDANNGLMWLRGGAGEHSLNSLNFQSGGVLPWMQQRLDPTLLGNNHNQQYQSLLAAGLQNRGNGDLLRQQMMHFQQTFPFLQQSGNQNPSLQFQQQQAIQQSTSSNNLQPQERVLMENLSQNLLQKSHNIYNQEEQAQQQNNTYHDSVLIQSDQFLQRQHSNVPSPSYSKPDFLDSSMKFSSSVSPIQNVPASLCREGSGSDILNLSRTSQSMVTEQMPQQSWTSSMYPPMQVKAFSNLMSHAHYSGKDSSSVHPYCASENQNPTLFGNNINSSGLVLPTTATGYAPSSVDTDTSTMQMGDSGFQGQLYACMQDSPELLQSSGQVGPRNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGEDPLRSGWQLVFVDREDDMLLLGDDPWESFVNNVWYIKILSPEDIQKMGEHVVGLEPLGRNAG 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2238 819 Gene3D - 294 365 - -
Prci2g2238 819 MobiDBLite consensus disorder prediction 471 492 - -
Prci2g2238 819 Pfam Auxin response factor 255 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci2g2238 819 SMART B3_2 129 231 IPR003340 GO:0003677
Prci2g2238 819 Gene3D - 127 230 IPR015300 -
Prci2g2238 819 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 805 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci2g2238 819 FunFam Auxin response factor 294 366 - -
Prci2g2238 819 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Prci2g2238 819 CDD B3_DNA 128 229 IPR003340 GO:0003677
Prci2g2238 819 ProSiteProfiles PB1 domain profile. 718 800 IPR000270 GO:0005515
Prci2g2238 819 FunFam Auxin response factor 127 231 - -
Prci2g2238 819 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Prci2g2238 819 SUPERFAMILY CAD & PB1 domains 711 790 - -
Prci2g2238 819 Gene3D - 714 805 - -
Prci2g2238 819 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Prci2g2238 819 FunFam Auxin response factor 713 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2238 Prci-Chr2 17435285 17454866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2238 99 810 B3 DNA Binding Superfamily AT5G37020 64.787 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci2g2238 B3 2.1e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2238 - - gmx:100780393 1296.95