LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g2228	ATGCTTCTGAACCTGCAACAGAAACCCCCCTTCTTCTTCATCTTGTTGAGCTTCACGATCTGGTCATGGTGGACCCTTGACGGCGTCGTTTCAGACCCTCAGACAATTGCTGTGAGGCTAGGTTGCAGCCAAACCAATGTCAGTGACGTATCCATCTTCCAAGACAACCTAAACGCAACGTATCAGAACATTAGAACGCAGATCAGCAACCAAAGCAAACACTTCGCCACGGCGCAGGTAGTGAAGGGTAACAACCCTGCTTACGGCCTTTTTCAGTGCAGAAACTACCTCTCCATCGCCGACTGTCTCTCTTGCTTCGACTCTGCCGCCGGTTTGCTACGACACAACTGCTCCGCCGCCGTCAACGGCGCCCACCTCATATACGACGGTTGCTTCCTCAGGTACGAGAGCACTACCTTCTTTGACCAGTCCACAGACGCAGGCAACAACATTCATTGTGGAAATGAAACAAAAAATTCCACAGAACTTGCTTCAACTGTGCAACAAACGCTGAAGAATCTGGAAATAGCAACACCAAGAATTGCTGGTTACTTTGCAGCCACTAAAACGACAGTTCCTAACAGTAACGGTTCAACCATTTATGCCTTTGCTCAATGTGTTGAGGCTCTCACTCAAAGTGGCTGCGACAATTGCTTAAACATTGCCTTAAGAAATTTTCAGATTTGTCTCCCCAACTCAAATGCTAAGGCTTTTGATTTTGGCTGTTTCATGAGATACTCCACCACTGCCTTCTTCGCTGACAATCAAACCACTGATATCAATCACATCTTGAAACAAGGAGATTCAAGCAAGAAGGGGGCCATTATTGGTGGTCTCGTGGGAGGAGTATCTTTTATTTTGATTCTCTTTGCGTTGTTTGCTTTGTATAGTCGATCAAAGTCATCGAAGATGGTTCCTAAAGGTGACATTTTGGGATCAACTGAGTTAAAAGGTCCTGTTAACTTTAGGTATAGAGATCTAAAGTCAGCGACACAAAACTTCAGTGAAAAAAATAAACTAGGAGAAGAAGCTTTTGGTGATGTATACAAGGGTACTTTAAAAAATGGAAAAGTAGTTGCTATCAAGAAATTGGATTTAGGCCAATCCAGACAGATGGAGAAAGAATTTAAGAGTGAAGTAAAGTTGATAAGTAACGTTCATCATCGAAATATTGTTCGACTTTTGGGATGTTGCAACAAAGGCCAAGAGAGACTTCTTGTTTATGAGCACATGAAAAACAACGATGTTGGACAATTCCTTTTTGGTGAAAATAAAGACGCTCTCAGTTGGATGCAACGTTATGGGATAATTTTGGGCACTGCAAGGGGTTTGGCATATTTACATGAAGAATTTCATGTTTGCATCATACATAGAGATATAAAAACTAATAACATCTTCTTGGATGATGATTTCCAACCTAAAATTGCTAATTTTGGATTAGCGAGGCTTCTGACAAGAGATCAATCTCATCTCAATACAAATTTTGCTGGAACAATGGGATATGTAGCACCTGAATATGCAATGCATGGACAATTATCAGAAAAGGTAGATATTTATAGTTATGGTGTCATAATCCTAGAAATCATAAGTGGACAAAAAGTTAGTGCATCAAAGGTTGATGACAAGGGCGGATACCTCCTTCAAAGAGCTTGGAAACTGTACGAGAGAGGAATGCACATAGAGTTTGTGGACAAAAACTTAGACCCAAATGAGTATGATGCAGAAGAGATTAAGAAGATCATAGAGATTGGATTGCTTTGCACACAAGCATCACCCGCAGCAAGGCCAAAAATGTCTGAAATTGTTAGAATGCTCAAGAGAAAGAGCTTAATGGAGCACACACAACCCACTATGCCTGTCTATGTTGATCCTAGTTCTTGGCCCAAGAGAGAAACCTCTGTGTCTCATAGTTCGTCTTCATCAAATGCTACTGTCTCCGTTTCCATTCTATCAGGAAGGTGA	1962	0.4169	MLLNLQQKPPFFFILLSFTIWSWWTLDGVVSDPQTIAVRLGCSQTNVSDVSIFQDNLNATYQNIRTQISNQSKHFATAQVVKGNNPAYGLFQCRNYLSIADCLSCFDSAAGLLRHNCSAAVNGAHLIYDGCFLRYESTTFFDQSTDAGNNIHCGNETKNSTELASTVQQTLKNLEIATPRIAGYFAATKTTVPNSNGSTIYAFAQCVEALTQSGCDNCLNIALRNFQICLPNSNAKAFDFGCFMRYSTTAFFADNQTTDINHILKQGDSSKKGAIIGGLVGGVSFILILFALFALYSRSKSSKMVPKGDILGSTELKGPVNFRYRDLKSATQNFSEKNKLGEEAFGDVYKGTLKNGKVVAIKKLDLGQSRQMEKEFKSEVKLISNVHHRNIVRLLGCCNKGQERLLVYEHMKNNDVGQFLFGENKDALSWMQRYGIILGTARGLAYLHEEFHVCIIHRDIKTNNIFLDDDFQPKIANFGLARLLTRDQSHLNTNFAGTMGYVAPEYAMHGQLSEKVDIYSYGVIILEIISGQKVSASKVDDKGGYLLQRAWKLYERGMHIEFVDKNLDPNEYDAEEIKKIIEIGLLCTQASPAARPKMSEIVRMLKRKSLMEHTQPTMPVYVDPSSWPKRETSVSHSSSSSNATVSVSILSGR	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g2228	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Prci2g2228	653	Gene3D	-	148	251	IPR038408	-
	Prci2g2228	653	Gene3D	-	35	140	IPR038408	-
	Prci2g2228	653	CDD	STKc_IRAK	340	607	-	-
	Prci2g2228	653	Gene3D	Phosphorylase Kinase; domain 1	298	410	-	-
	Prci2g2228	653	ProSiteProfiles	Protein kinase domain profile.	334	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci2g2228	653	ProSiteProfiles	Gnk2-homologous domain profile.	145	251	IPR002902	-
	Prci2g2228	653	ProSiteProfiles	Gnk2-homologous domain profile.	35	140	IPR002902	-
	Prci2g2228	653	FunFam	Cysteine-rich receptor-like protein kinase 2	411	613	-	-
	Prci2g2228	653	SUPERFAMILY	Protein kinase-like (PK-like)	316	605	IPR011009	-
	Prci2g2228	653	Pfam	Salt stress response/antifungal	42	137	IPR002902	-
	Prci2g2228	653	Pfam	Salt stress response/antifungal	158	248	IPR002902	-
	Prci2g2228	653	SMART	serkin_6	334	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci2g2228	653	FunFam	Cysteine-rich receptor-like protein kinase 2	148	251	-	-
	Prci2g2228	653	Gene3D	Transferase(Phosphotransferase) domain 1	411	620	-	-
	Prci2g2228	653	FunFam	Cysteine-rich receptor-like protein kinase 2	299	410	-	-
	Prci2g2228	653	Pfam	Protein kinase domain	334	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci2g2228	653	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	89	639	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g2228	Prci-Chr2	17304751	17310829	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g2228	9	653	Receptor kinase-like Gene Family	AT1G70520	36.762	9.67e-131	397

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Prci2g2228		Pkinase	1.4e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g2228	-		-	gmx:100813585	816.224